genome.fa.s169.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1635 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924446--924478	13	2.5	13	95	0	57	3	51	12	33	1.54
928814--928856	2	22.0	2	90	4	70	46	0	0	53	1.00
928886--928924	15	2.5	16	83	4	53	43	0	2	53	1.14
929244--929276	15	2.1	16	88	5	50	30	0	0	69	0.88
929682--929716	15	2.3	15	90	5	52	74	0	5	20	1.02
930092--930124	17	2.0	17	88	5	50	51	0	0	48	1.00
930095--930213	25	4.4	25	69	25	82	45	1	0	52	1.16
930147--930275	67	1.9	66	87	4	188	41	1	0	57	1.08
930146--930273	32	3.9	32	81	9	159	40	1	0	57	1.08
933275--933322	21	2.2	22	85	10	64	35	0	0	64	0.94
933708--933743	14	2.6	15	87	12	51	38	0	0	61	0.96
933998--934032	17	2.1	17	94	0	61	31	0	2	65	1.07
936846--936893	3	16.0	3	100	0	96	66	0	0	33	0.92
936995--937028	3	11.3	3	100	0	68	67	0	0	32	0.91
938953--939022	31	2.3	31	80	2	88	38	22	2	35	1.69
939540--939582	18	2.3	19	80	4	52	51	0	2	46	1.13
940629--940674	2	23.0	2	100	0	92	50	0	0	50	1.00
941255--941281	2	13.5	2	100	0	54	51	0	48	0	1.00
943881--943908	2	14.0	2	100	0	56	50	0	0	50	1.00
946322--946364	2	21.5	2	100	0	86	0	51	0	48	1.00
947429--947470	2	21.0	2	100	0	84	50	0	50	0	1.00
949206--949251	17	2.6	17	80	12	58	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949564--949605	3	14.0	3	100	0	84	66	0	0	33	0.92
949811--949873	11	5.5	11	73	16	56	38	0	0	61	0.96
949842--949931	8	10.9	8	68	18	51	38	1	1	58	1.12
951859--951935	40	1.9	40	89	0	118	29	7	19	42	1.79
953900--954045	77	1.9	79	89	4	233	38	16	13	32	1.87
965231--965289	26	2.2	27	82	8	77	50	0	0	49	1.00
965764--965957	96	2.0	96	97	0	370	47	3	10	38	1.55
966122--966155	16	2.1	17	88	5	52	47	14	2	35	1.60
967653--967705	19	3.0	18	81	10	65	35	3	5	54	1.42
967656--967713	16	3.4	16	83	7	62	37	1	3	56	1.26
967688--967756	36	1.9	35	77	13	70	39	1	0	59	1.06
967698--967759	31	2.0	31	81	12	74	41	1	0	56	1.09
968244--968327	41	2.0	41	100	0	168	48	11	7	32	1.67
974843--974901	31	1.9	31	86	6	84	49	0	0	50	1.00
975858--975888	16	1.9	16	93	0	53	29	0	0	70	0.87
977056--977092	2	18.5	2	100	0	74	48	0	0	51	1.00
982166--982208	18	2.4	17	82	17	52	27	13	9	48	1.73
982870--982914	24	1.9	24	82	13	58	24	0	6	68	1.13
982884--982940	23	2.4	24	82	5	71	28	0	5	66	1.13
983150--983187	2	19.0	2	94	0	67	47	2	0	50	1.15
983634--983754	17	6.9	17	70	15	70	61	0	0	38	0.96
983654--983739	32	2.8	32	82	7	106	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983654--983731	33	2.4	33	86	4	104	60	0	0	39	0.97
984463--984516	20	2.8	19	84	15	60	66	0	1	31	1.02
984467--984516	3	16.7	3	76	15	50	66	0	2	32	1.03
984661--984731	39	1.9	37	86	11	101	54	0	0	45	0.99
984677--984762	30	2.8	30	81	8	86	52	0	0	47	1.00
984745--984779	16	2.1	17	89	5	54	62	0	2	34	1.10
984850--984886	2	18.5	2	100	0	74	51	0	0	48	1.00
985420--985473	21	2.7	20	80	11	65	53	1	0	44	1.11
985877--985959	29	2.8	29	78	10	87	33	1	6	59	1.30
986635--986679	21	2.1	22	88	12	67	62	0	0	37	0.96
987846--987917	18	4.1	17	72	15	65	50	1	1	47	1.18
989120--989156	16	2.3	16	90	0	56	48	8	2	40	1.47
989639--989687	15	3.4	15	75	18	50	28	2	0	69	1.00
989652--989687	3	11.7	3	88	5	54	27	0	0	72	0.85
989756--989801	13	3.7	13	77	19	53	26	0	2	71	0.97
990152--990177	13	2.0	13	100	0	52	30	0	0	69	0.89
990559--990607	26	2.0	24	88	8	71	34	2	0	63	1.06
991826--991886	31	1.9	32	87	9	90	55	1	0	42	1.09
992326--992363	18	2.1	19	85	5	51	39	5	13	42	1.66
992473--992499	12	2.2	12	100	0	54	40	0	40	18	1.51
992644--992672	9	3.2	9	100	0	58	20	0	0	79	0.74
992860--992939	8	10.0	8	70	24	62	36	1	1	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992886--992971	45	1.9	45	83	9	113	40	1	0	58	1.06
992861--992952	27	3.3	27	77	14	89	36	1	1	60	1.11
992986--993048	20	3.2	19	75	6	54	36	4	0	58	1.19
992995--993064	19	3.7	19	72	27	60	38	4	0	57	1.19
993178--993253	37	2.1	37	82	5	91	59	5	0	35	1.20
993230--993272	16	2.6	16	82	14	52	53	2	0	44	1.13
993815--993866	19	2.5	21	76	17	56	36	0	11	51	1.38
993885--993935	20	2.5	21	83	3	68	49	0	3	47	1.20
993925--993965	21	2.0	20	86	13	57	60	0	0	39	0.96
994516--994543	2	14.0	2	100	0	56	50	0	0	50	1.00
994661--994707	23	2.0	23	84	15	62	44	0	53	2	1.12
994793--994822	12	2.6	11	90	10	51	40	0	0	60	0.97
994794--994819	12	2.2	12	100	0	52	38	0	0	61	0.96
995790--995834	20	2.3	20	81	11	58	42	0	0	57	0.98
995797--995877	31	2.7	31	78	12	89	40	1	0	58	1.06
995831--995884	17	3.4	16	75	14	58	40	1	0	57	1.09
995770--995896	31	4.4	29	72	20	83	37	1	0	59	1.12
998168--998209	16	2.6	16	85	7	59	52	7	4	35	1.50
1004947--1005012	32	2.1	32	94	0	114	51	22	7	18	1.71
1006807--1006840	2	17.0	2	100	0	68	50	0	0	50	1.00
1007788--1007833	7	7.1	7	87	9	55	43	0	0	56	0.99
1008344--1008382	20	2.0	19	95	5	69	35	23	10	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1008404--1008456	21	2.5	22	82	11	67	39	16	15	28	1.89
1008516--1008541	13	2.0	13	100	0	52	38	7	15	38	1.76
1009933--1009970	20	1.9	20	89	10	60	52	0	2	44	1.14
1012071--1012114	21	2.0	22	82	4	54	43	0	0	56	0.99
1014723--1014758	18	2.0	18	88	0	54	41	2	2	52	1.30
1016270--1016301	2	16.0	2	100	0	64	50	0	0	50	1.00
1016287--1016455	84	2.0	84	98	0	329	35	12	20	31	1.90
1016563--1016600	19	2.1	19	95	5	69	42	0	0	57	0.98
1017405--1017456	25	2.1	25	82	7	61	53	0	0	46	1.00
1017430--1017474	19	2.4	18	79	13	56	60	0	0	40	0.97
1018086--1018126	19	2.2	19	86	8	57	48	0	4	46	1.23
1018680--1018720	21	2.0	21	85	9	57	41	12	7	39	1.70
1018760--1018830	20	3.6	19	77	7	70	40	16	12	29	1.86
1018800--1018936	53	2.6	53	96	1	247	37	18	17	27	1.93
1018960--1018990	10	3.1	10	90	0	53	22	29	6	41	1.78
1019091--1019116	13	2.0	13	100	0	52	30	15	15	38	1.88
1019679--1019732	20	2.7	20	82	0	72	38	14	16	29	1.89
1020284--1020326	21	2.1	21	91	8	72	37	13	4	44	1.65
1022131--1022159	10	2.9	10	100	0	58	31	0	20	48	1.50
1026768--1026816	3	16.3	3	91	0	80	30	32	0	36	1.58
1028926--1028965	18	2.2	18	86	0	53	57	0	0	42	0.98
1028951--1028993	22	2.0	22	86	9	61	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029743--1029770	2	14.0	2	100	0	56	50	0	0	50	1.00
1030622--1030657	18	2.0	18	89	10	56	55	16	0	27	1.42
1030669--1030694	2	13.0	2	100	0	52	50	0	0	50	1.00
1031083--1031122	21	1.9	21	90	10	64	60	0	0	40	0.97
1031083--1031138	21	2.7	21	78	13	55	57	0	0	42	0.99
1031404--1031451	13	3.6	13	86	10	62	75	0	2	22	0.91
1031413--1031445	11	3.1	11	86	4	50	81	0	0	18	0.68
1031404--1031457	24	2.4	22	78	9	63	74	0	1	24	0.92
1031431--1031477	17	2.6	17	87	12	60	70	0	4	25	1.05
1032719--1032751	15	2.2	15	94	0	57	69	0	3	27	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14