genome.fa.s169.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  7  of  14  ( 1635 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032944--1032978	14	2.5	14	85	0	52	42	0	0	57	0.99
1032939--1033000	19	3.2	19	81	9	54	38	0	0	61	0.96
1033517--1033567	25	2.0	26	84	3	68	50	1	1	45	1.24
1033869--1033915	13	3.8	12	83	13	60	61	0	0	38	0.96
1033870--1033915	11	4.5	11	76	15	53	63	0	0	36	0.95
1033874--1033928	17	3.1	17	84	10	58	61	0	0	38	0.96
1033869--1033915	6	7.7	6	83	11	60	61	0	0	38	0.96
1034366--1034427	30	2.1	30	84	0	79	25	38	11	24	1.88
1034512--1034541	15	2.0	15	93	0	51	26	56	0	16	1.40
1034522--1034612	42	2.2	42	83	0	119	25	47	3	24	1.67
1034577--1034646	30	2.3	30	87	0	104	25	48	4	21	1.68
1034535--1034690	78	2.1	74	82	7	181	23	47	4	24	1.70
1034720--1035030	48	6.5	47	77	6	284	27	49	2	20	1.62
1034621--1035030	96	4.2	96	77	4	358	27	49	3	20	1.66
1034765--1035031	144	1.9	144	86	1	365	28	49	2	19	1.62
1034999--1035055	24	2.4	25	82	5	64	31	45	1	21	1.62
1034957--1035103	72	2.0	72	82	2	179	28	47	2	21	1.62
1034909--1035151	120	2.0	120	82	1	290	27	48	1	22	1.58
1035092--1035175	21	3.7	21	72	17	78	26	52	0	21	1.47
1035038--1035204	48	3.4	49	84	7	180	26	50	1	22	1.56
1035118--1035204	30	3.2	30	71	27	102	28	50	0	20	1.48
1035173--1035289	42	2.8	42	97	0	216	27	47	1	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036867--1036923	21	2.7	21	94	0	96	38	38	5	17	1.72
1036952--1036979	6	4.7	6	100	0	56	17	67	0	14	1.22
1036969--1037035	27	2.5	27	85	0	89	29	50	0	19	1.48
1037053--1037267	48	4.5	48	79	3	209	30	48	3	17	1.64
1037098--1037176	27	3.1	27	72	20	80	31	50	1	16	1.53
1037098--1037493	96	4.1	96	71	7	291	26	50	3	19	1.64
1038191--1038229	19	2.0	20	90	5	62	33	2	0	64	1.08
1038433--1038473	2	20.5	2	94	0	55	41	0	7	51	1.30
1039498--1039547	16	3.1	16	80	5	57	30	2	10	58	1.42
1040187--1040252	34	2.0	33	82	8	80	53	0	0	46	1.00
1040223--1040295	33	2.1	35	82	5	87	58	0	0	41	0.98
1043606--1044051	173	2.5	172	87	6	588	37	15	17	30	1.90
1047475--1047513	2	19.5	2	100	0	78	51	0	0	48	1.00
1053686--1053710	8	3.1	8	100	0	50	12	0	0	88	0.53
1062974--1063038	32	2.0	32	91	5	105	38	7	12	41	1.71
1063141--1063208	28	2.4	28	80	4	75	48	0	1	50	1.10
1063154--1063222	37	1.9	37	85	5	97	43	0	1	55	1.08
1063196--1063254	28	2.1	28	81	12	68	38	0	0	61	0.96
1063202--1063254	28	1.9	28	85	11	74	35	0	0	64	0.94
1063353--1063404	17	2.9	18	86	11	72	26	0	3	69	1.06
1063767--1063800	17	2.0	17	88	0	50	29	5	2	61	1.34
1064631--1064697	22	3.1	22	81	14	61	35	1	2	59	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064631--1064693	23	2.8	22	85	7	74	36	1	3	58	1.23
1064645--1064701	23	2.6	22	81	13	64	35	1	3	59	1.25
1065456--1065486	14	2.2	14	94	0	53	54	0	0	45	0.99
1066135--1066168	2	17.0	2	100	0	68	0	50	0	50	1.00
1066307--1066507	112	1.8	109	84	8	275	23	11	12	52	1.72
1078970--1079107	69	2.0	69	95	0	249	27	15	16	39	1.89
1079950--1079991	14	3.3	14	78	21	56	50	0	4	45	1.23
1079944--1080033	27	3.5	25	75	17	85	54	0	2	43	1.12
1080995--1081047	25	2.1	26	80	16	67	49	0	0	50	1.00
1081001--1081047	25	2.0	25	87	8	71	51	0	0	48	1.00
1081204--1081237	11	3.2	11	87	8	52	64	0	0	35	0.94
1082381--1082415	18	1.9	18	94	0	61	42	5	2	48	1.41
1084230--1084286	26	2.3	24	85	11	71	40	3	0	56	1.17
1084422--1084480	3	19.3	3	85	3	73	37	0	1	61	1.07
1084419--1084480	15	4.1	15	85	2	88	38	0	1	59	1.07
1090867--1090949	32	2.6	32	84	3	114	53	2	3	40	1.32
1091562--1091605	22	2.0	23	86	13	65	65	0	0	34	0.93
1091561--1091603	16	2.6	17	82	10	54	65	0	0	34	0.93
1091547--1091602	27	2.0	28	89	3	87	62	0	0	37	0.95
1094307--1094355	24	2.0	24	100	0	98	28	30	12	28	1.93
1099997--1100041	22	2.0	22	91	0	72	48	20	8	22	1.76
1100739--1100786	23	2.1	23	100	0	96	50	4	0	45	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100985--1101056	31	2.3	31	100	0	144	43	6	15	34	1.73
1102031--1102081	24	2.3	21	80	12	59	47	0	0	52	1.00
1102034--1102101	28	2.5	28	80	2	84	42	0	0	57	0.98
1102335--1102377	3	14.3	3	100	0	86	32	0	0	67	0.91
1102493--1102532	2	20.5	2	84	5	55	45	2	2	50	1.28
1102593--1102707	16	6.6	16	69	20	54	43	0	0	54	1.12
1102587--1102673	18	4.4	20	72	20	69	42	1	1	55	1.15
1102631--1102683	20	2.5	21	85	14	65	43	1	0	54	1.11
1102593--1102700	48	2.2	49	80	14	116	42	0	0	55	1.12
1102673--1102725	20	2.7	20	80	11	56	47	0	0	52	1.00
1102602--1102807	15	14.0	14	64	25	54	43	2	0	52	1.22
1102931--1102972	15	3.0	14	86	6	50	59	0	0	40	0.97
1103185--1103222	2	19.0	2	100	0	76	50	0	0	50	1.00
1103371--1103411	20	2.0	20	90	0	64	43	0	0	56	0.99
1103370--1103400	14	2.1	15	94	5	55	41	0	0	58	0.98
1103376--1103423	11	4.4	12	73	21	52	39	0	0	60	0.97
1104701--1104742	18	2.3	19	95	4	77	61	0	11	26	1.30
1106254--1106303	19	2.6	20	84	12	61	36	0	6	58	1.23
1106211--1106300	45	2.0	46	81	14	107	36	2	4	56	1.32
1106257--1106303	20	2.3	19	85	10	58	38	0	6	55	1.26
1109202--1109248	9	5.3	9	79	2	51	40	2	0	57	1.11
1109202--1109251	18	2.8	18	81	0	64	42	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114428--1114512	42	2.0	42	86	0	116	42	2	7	48	1.43
1114890--1114955	16	4.2	16	75	21	59	57	1	0	40	1.08
1114934--1114984	9	5.4	9	84	11	59	62	0	0	37	0.95
1114929--1114975	21	2.2	21	88	7	69	63	0	0	36	0.94
1115093--1115136	14	3.2	14	90	3	63	52	0	4	43	1.22
1115309--1115395	19	4.6	19	71	11	63	59	1	1	37	1.12
1115324--1115348	11	2.3	11	100	0	50	64	0	0	36	0.94
1115331--1115395	26	2.3	27	79	15	69	58	0	1	40	1.07
1119897--1119950	17	3.3	17	72	25	53	37	0	5	57	1.22
1120120--1120146	14	1.9	14	100	0	54	74	3	0	22	0.98
1121933--1121963	12	2.6	12	100	0	62	35	0	12	51	1.40
1121909--1121941	3	11.0	3	100	0	66	33	0	0	66	0.92
1123464--1123530	11	6.5	11	74	20	56	61	0	0	38	0.96
1123855--1123879	12	2.1	12	100	0	50	0	8	0	92	0.40
1124265--1124362	49	2.0	50	84	9	130	51	1	7	40	1.36
1124266--1124373	25	4.2	25	65	19	60	47	0	7	44	1.37
1124880--1124906	3	9.0	3	100	0	54	66	0	0	33	0.92
1125705--1125733	2	14.5	2	100	0	58	51	0	0	48	1.00
1126137--1126188	19	2.7	20	76	8	63	44	0	1	53	1.11
1126172--1126230	20	3.3	19	71	23	56	50	0	0	49	1.00
1126173--1126241	34	2.0	34	83	5	86	55	0	0	44	0.99
1127453--1127506	24	2.2	24	80	0	63	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1134368--1134412	2	22.5	2	100	0	90	51	0	0	48	1.00
1135340--1135381	19	2.1	21	86	8	61	45	16	4	33	1.69
1137182--1137262	43	1.9	42	82	7	101	39	11	6	43	1.65
1137503--1137569	16	4.2	16	81	7	82	37	1	2	58	1.23
1137513--1137562	10	4.8	10	76	9	55	38	0	2	60	1.09
1137501--1137562	32	1.9	32	93	0	106	35	1	4	58	1.29
1137513--1137578	32	2.1	32	82	5	80	40	1	1	56	1.18
1137598--1137632	15	2.3	15	90	5	52	34	0	8	57	1.29
1137712--1137761	15	3.2	15	83	10	64	44	0	0	56	0.99
1137713--1137761	16	3.1	16	82	11	64	42	0	0	57	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14