genome.fa.s169.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1635 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578616--578662	16	3.1	16	85	11	55	59	0	2	38	1.09
581130--581237	54	2.0	53	94	1	189	17	11	3	67	1.35
582549--582573	3	8.3	3	100	0	50	36	0	0	64	0.94
582958--583023	27	2.4	27	85	7	89	46	22	9	21	1.79
587275--587345	27	2.6	27	88	6	99	46	23	7	22	1.76
588790--588820	14	2.2	14	94	0	53	61	0	0	38	0.96
589304--589372	30	2.3	30	83	14	88	50	1	0	47	1.09
602224--602258	17	2.1	16	89	5	52	48	0	0	51	1.00
603763--603791	2	14.5	2	100	0	58	51	0	0	48	1.00
604048--604085	15	2.5	15	83	8	51	57	0	0	42	0.98
604266--604318	2	26.5	2	92	0	88	49	3	0	47	1.19
604542--604591	22	2.3	23	80	16	61	58	0	0	42	0.98
605485--605527	17	2.4	18	92	7	70	48	2	0	48	1.14
605535--605588	2	27.0	2	96	0	99	48	0	0	51	1.00
611677--611891	110	2.0	110	91	0	349	33	11	13	41	1.81
612073--612174	47	2.2	48	86	6	140	32	3	20	43	1.70
612394--612426	12	2.8	12	90	0	57	18	18	33	30	1.94
613854--613886	11	3.1	11	86	4	50	45	0	3	51	1.16
614921--614980	18	3.1	18	66	25	50	38	5	5	51	1.45
614922--614984	19	3.2	19	70	20	58	38	4	4	52	1.44
618328--618949	217	2.9	215	89	1	897	45	13	21	20	1.85
623687--623761	26	3.0	25	76	14	82	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623693--623756	25	2.6	24	75	20	60	59	0	0	40	0.97
628960--629006	12	3.7	12	78	15	58	44	4	10	40	1.59
628957--629009	27	2.0	27	96	0	97	45	3	11	39	1.58
630755--630784	2	15.0	2	100	0	60	50	50	0	0	1.00
635547--635585	20	2.0	19	85	5	51	28	5	48	17	1.68
636155--636194	20	2.0	20	85	5	53	65	12	0	22	1.26
637360--637433	27	2.7	27	83	6	87	27	8	17	47	1.76
637360--637459	27	3.9	24	76	12	83	24	8	21	47	1.77
639981--640023	21	2.0	22	86	4	61	37	20	23	18	1.94
641906--641980	27	2.8	27	95	0	132	21	12	21	45	1.84
644849--644909	32	2.0	32	81	9	74	57	0	0	42	0.98
644894--644933	11	3.1	14	76	23	52	62	0	0	37	0.95
644902--644949	17	2.8	18	78	12	57	64	0	0	35	0.94
644876--644937	22	2.7	23	85	14	85	61	0	0	38	0.96
647592--647620	14	2.1	14	93	6	51	34	20	13	31	1.92
649549--649791	78	3.2	78	67	15	218	52	12	2	31	1.54
649337--649920	150	3.8	152	91	2	937	51	12	3	32	1.56
650659--650716	18	3.0	18	73	22	55	24	0	3	72	1.00
650671--650708	13	2.8	14	88	8	60	26	0	5	68	1.11
654541--654596	24	2.3	24	81	9	60	25	10	8	55	1.63
657298--657342	21	2.2	20	84	4	54	51	8	2	37	1.46
661852--661902	22	2.5	20	79	17	59	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661861--661904	22	2.0	22	91	8	72	34	0	0	65	0.93
667600--667628	2	15.0	2	92	7	51	48	0	0	51	1.00
667753--667831	40	2.0	40	85	5	106	29	12	22	35	1.91
669236--669291	22	2.5	22	85	11	69	57	0	0	42	0.99
669251--669297	18	2.4	20	80	20	55	59	0	0	40	0.97
669752--669784	2	16.5	2	100	0	66	51	0	0	48	1.00
672276--672317	22	1.9	22	90	0	66	30	0	0	69	0.89
674462--674499	20	1.9	20	88	0	58	42	5	0	52	1.24
684869--684897	2	14.5	2	100	0	58	51	0	0	48	1.00
688374--688411	20	1.9	20	84	10	51	60	5	2	31	1.33
688710--688737	2	14.0	2	100	0	56	50	0	0	50	1.00
690075--690113	15	2.6	15	84	8	53	56	5	0	38	1.22
690277--690307	2	15.5	2	93	0	53	45	0	3	51	1.17
691570--691594	2	12.5	2	100	0	50	52	0	0	48	1.00
691774--691818	18	2.5	19	82	10	58	51	0	0	48	1.00
695900--695964	33	2.0	33	84	6	87	40	12	6	41	1.67
697650--697684	2	17.5	2	100	0	70	51	0	0	48	1.00
699294--699364	32	2.2	33	82	7	83	53	7	1	38	1.37
705152--705186	14	2.6	13	90	4	52	42	0	0	57	0.99
706347--706386	20	2.0	20	85	0	53	57	0	2	40	1.12
706993--707046	12	4.8	12	82	6	60	35	1	0	62	1.06
709072--709117	6	7.7	6	85	0	56	8	21	32	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709072--709117	12	3.8	12	88	0	65	8	21	32	36	1.84
709783--709810	14	2.0	14	100	0	56	64	0	0	35	0.94
711513--711547	4	8.8	4	93	0	52	22	5	0	71	1.07
712684--712708	7	3.6	7	100	0	50	76	12	0	12	1.04
714197--714267	27	2.6	27	88	6	99	46	23	7	22	1.76
718646--718691	20	2.3	20	84	0	56	32	4	52	10	1.56
718768--718838	27	2.6	27	82	6	81	47	19	5	26	1.71
721694--721755	25	2.6	23	72	20	63	38	1	0	59	1.07
729881--729946	28	2.4	28	80	7	73	53	15	1	30	1.51
731039--731083	2	22.5	2	95	0	81	51	0	0	48	1.00
731266--731324	26	2.4	25	80	11	68	37	0	0	62	0.95
732081--732119	17	2.4	16	91	4	60	41	0	0	58	0.98
732081--732119	8	4.7	9	84	15	57	41	0	0	58	0.98
732677--732718	2	21.0	2	100	0	84	50	0	0	50	1.00
735519--735578	15	4.4	14	74	18	54	71	11	1	15	1.22
735516--735595	26	3.0	26	90	1	115	66	12	2	18	1.35
736856--736897	15	2.7	16	85	3	59	50	4	7	38	1.51
740321--740383	25	2.5	25	87	5	83	74	9	0	15	1.06
740320--740383	14	5.2	12	72	18	51	75	9	0	15	1.05
740914--740967	28	1.9	27	82	14	65	70	9	1	18	1.23
743066--743121	17	3.0	19	76	12	62	55	3	1	39	1.28
743606--743653	24	2.1	22	81	11	53	47	0	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745069--745116	19	2.4	20	75	10	53	64	4	0	31	1.12
746352--746420	19	3.6	19	94	2	111	37	0	0	62	0.96
747055--747125	27	2.6	27	88	0	97	26	7	21	45	1.77
747053--747148	27	3.7	25	80	6	88	23	7	22	45	1.77
751615--751685	27	2.6	27	84	0	88	26	7	19	46	1.75
751765--751810	13	3.5	13	93	0	74	10	41	6	41	1.66
752737--752789	28	1.9	27	82	17	65	66	5	5	22	1.35
755146--755185	16	2.4	17	84	16	57	47	2	2	47	1.29
755655--755711	2	28.5	2	100	0	114	49	0	0	50	1.00
756987--757057	27	2.6	27	88	6	99	46	23	7	22	1.76
761432--761477	20	2.3	20	88	0	65	34	4	50	10	1.57
761519--761569	25	2.0	25	81	7	59	47	17	7	27	1.75
762735--762779	14	3.4	14	74	20	51	77	8	0	13	0.98
762741--762806	25	2.6	26	83	9	82	74	6	3	16	1.15
762741--762804	26	2.6	25	85	5	76	75	6	3	15	1.14
762772--762810	17	2.3	17	86	8	53	74	0	5	20	1.01
763345--763388	19	2.4	19	81	11	56	75	11	0	13	1.06
763343--763403	31	2.0	31	87	6	88	73	11	0	14	1.09
764494--764553	25	2.4	25	88	2	86	73	8	0	18	1.08
767499--767528	2	15.0	2	100	0	60	50	0	0	50	1.00
768245--768284	21	1.9	21	90	10	64	60	0	0	40	0.97
768532--768616	34	2.5	34	98	0	161	17	0	40	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768585--768730	22	6.5	22	73	20	133	19	0	40	39	1.52
768562--768728	56	3.0	55	87	8	216	20	0	40	39	1.53
768618--768708	34	2.7	34	96	0	164	19	0	40	39	1.52
768532--768759	90	2.5	90	98	0	438	19	0	39	40	1.52
768585--768759	56	3.1	56	85	8	207	20	0	39	40	1.52
773428--773514	34	2.6	34	96	0	156	19	0	40	40	1.52
773454--773570	56	2.1	56	96	0	216	21	0	41	37	1.53
773510--773633	34	3.6	34	97	0	239	20	0	39	40	1.52
773428--773604	90	2.0	90	98	0	345	19	0	40	40	1.52
773481--773604	22	5.5	22	71	24	98	20	0	40	39	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14