Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1635 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1956417--1956515
51
2.0
48
83
13
121
48
1
0
50
1.07
1956902--1956960
30
2.0
30
89
0
91
38
3
3
54
1.34
1958033--1958106
36
2.1
36
100
0
148
41
9
10
37
1.73
1958070--1958251
92
2.0
92
97
0
346
41
7
5
45
1.56
1958178--1958332
69
2.2
69
89
2
231
36
5
7
51
1.51
1958530--1958569
17
2.4
17
88
12
57
52
2
5
40
1.37
1959615--1959673
22
2.5
23
78
21
68
38
0
1
59
1.08
1960368--1960538
9
18.6
9
69
22
56
38
0
0
61
0.96
1960370--1960556
56
3.4
56
74
15
208
38
0
0
61
0.96
1960446--1960477
12
2.4
14
90
10
50
43
0
0
56
0.99
1960467--1960566
20
5.2
20
71
22
70
39
0
0
61
0.96
1960374--1960579
109
1.9
109
88
4
317
39
0
0
59
1.05
1960371--1960582
28
7.7
27
70
16
134
38
0
0
60
1.04
1966504--1966536
2
16.5
2
100
0
66
48
0
0
51
1.00
1967326--1967363
18
2.1
18
85
9
51
44
0
2
52
1.14
1967425--1967497
4
18.8
4
70
16
55
20
1
5
72
1.12
1967429--1967471
11
3.7
11
84
6
50
20
0
4
74
1.00
1968568--1968614
18
2.8
17
84
12
53
55
0
0
44
0.99
1968540--1968665
57
2.2
58
79
10
127
55
1
3
39
1.25
1969318--1969356
2
19.5
2
94
0
69
48
0
2
48
1.15
1969389--1969440
20
2.5
20
79
17
54
32
5
1
59
1.32
1970241--1970280
2
20.0
2
100
0
80
50
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1970505--1970533
14
2.0
15
93
6
51
31
0
0
68
0.89
1971353--1971402
23
2.2
23
82
10
59
28
10
2
60
1.40
1972455--1972534
25
3.0
27
78
15
78
56
0
1
42
1.07
1972467--1972521
22
2.5
21
85
5
65
54
0
0
45
0.99
1973349--1973408
30
2.0
30
87
3
86
51
0
0
48
1.00
1973352--1973415
29
2.2
30
80
2
76
54
0
0
45
0.99
1974047--1974077
2
15.5
2
100
0
62
48
0
0
51
1.00
1975232--1975284
3
17.7
3
96
0
97
66
1
0
32
1.03
1976290--1976405
58
2.0
59
86
3
162
39
3
4
52
1.38
1976823--1976879
11
4.9
12
73
20
50
59
0
5
35
1.20
1978053--1978089
17
2.2
16
90
4
56
43
2
0
54
1.14
1978348--1978437
37
2.5
35
80
16
96
45
0
0
54
0.99
1978427--1978460
15
2.3
15
94
0
59
55
5
0
38
1.24
1981343--1981381
21
1.9
21
84
5
53
43
2
0
53
1.14
1981738--1981787
18
2.7
19
84
6
66
46
2
0
52
1.12
1984760--1984809
26
1.9
26
84
8
66
26
2
2
70
1.09
1986447--1986524
22
3.5
22
78
3
84
46
23
2
28
1.65
1986446--1986541
45
2.1
46
86
5
133
48
22
3
25
1.65
1989773--1989807
13
2.6
14
86
9
54
34
8
5
51
1.56
1990388--1990432
15
3.0
15
83
0
54
35
0
2
62
1.08
1991527--1991570
3
14.7
3
100
0
88
31
0
0
68
0.90
1992142--1992195
16
3.5
15
76
20
58
62
0
0
37
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1992948--1992979
6
5.2
6
96
3
55
68
15
0
15
1.21
1998719--1998743
13
1.9
13
100
0
50
32
8
20
40
1.81
2002424--2002450
14
1.9
14
100
0
54
33
0
0
66
0.92
2002422--2002470
22
2.2
22
82
7
64
36
0
0
63
0.95
2002999--2003042
16
2.6
17
83
13
56
36
4
6
52
1.49
2004172--2004235
30
2.1
30
97
0
119
20
3
18
57
1.53
2005218--2005262
3
15.0
3
95
0
81
66
2
0
31
1.04
2005531--2005656
17
7.2
18
71
24
76
63
0
1
34
1.04
2005558--2005690
9
13.7
10
64
20
50
63
1
1
33
1.12
2005560--2005616
19
3.0
20
84
7
73
63
0
1
35
1.05
2005568--2005656
42
2.1
42
82
15
105
64
0
2
33
1.06
2005582--2005677
21
4.8
19
69
22
63
62
1
1
35
1.09
2005867--2005901
2
17.5
2
93
0
61
51
0
2
45
1.16
2006077--2006103
2
13.5
2
100
0
54
51
0
0
48
1.00
2006599--2006636
21
1.9
20
84
10
51
44
0
2
52
1.14
2006683--2006726
20
2.3
19
84
11
54
63
0
0
36
0.95
2006891--2006935
14
3.1
15
80
6
56
60
2
0
37
1.09
2007644--2007703
16
3.7
15
76
8
57
36
0
5
58
1.20
2008324--2008383
29
2.1
29
84
6
77
53
0
0
46
1.00
2008440--2008480
20
2.0
20
86
9
57
56
0
0
43
0.99
2008916--2008953
19
2.0
19
90
10
60
39
0
0
60
0.97
2011645--2011697
24
2.2
24
82
0
70
56
3
1
37
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2012233--2012263
10
3.1
10
95
0
53
0
12
0
87
0.55
2012233--2012290
24
2.7
21
80
17
66
1
18
0
79
0.82
2012980--2013164
92
2.0
92
98
0
361
20
15
24
39
1.91
2013170--2013204
17
2.1
17
100
0
70
48
17
17
17
1.81
2013314--2013362
20
2.3
23
79
13
59
34
0
4
61
1.15
2013377--2013565
104
1.8
103
81
5
238
31
5
7
56
1.49
2014196--2014248
18
2.9
19
81
10
58
45
0
0
54
0.99
2014651--2014699
16
3.1
16
83
11
66
40
0
0
59
0.98
2014659--2014710
15
3.5
15
78
5
52
44
0
0
55
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!