genome.fa.s169.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  13  of  14  ( 1635 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1815594--1815635	11	3.7	11	93	3	66	85	9	4	0	0.72
1815594--1815642	11	4.3	11	87	10	62	85	10	4	0	0.71
1815604--1815652	16	3.1	15	82	11	53	85	10	4	0	0.71
1815606--1815651	13	3.5	13	88	11	60	84	10	4	0	0.75
1816635--1817442	55	14.4	54	84	8	938	27	28	20	23	1.99
1816686--1816771	27	3.1	27	62	15	68	27	30	18	23	1.98
1818179--1818256	21	3.7	21	98	0	147	33	10	19	37	1.85
1818177--1818276	42	2.4	43	86	5	150	35	14	17	34	1.89
1818312--1818379	19	3.9	19	78	21	85	35	10	14	39	1.80
1818314--1818374	32	1.9	32	96	0	113	34	9	16	39	1.82
1818419--1818444	13	2.0	13	100	0	52	30	15	15	38	1.88
1818399--1818465	33	2.0	32	86	11	91	25	13	16	44	1.84
1820903--1820978	27	2.8	28	84	6	84	22	30	22	25	1.99
1820962--1821131	52	3.3	50	74	14	132	29	25	12	32	1.92
1821114--1821190	28	2.8	28	87	0	100	23	33	19	23	1.97
1820792--1821205	212	2.0	212	87	3	611	28	26	13	31	1.94
1820853--1821269	107	3.9	108	71	10	273	27	27	14	31	1.95
1821144--1821346	79	2.6	78	81	5	212	25	29	15	30	1.96
1824134--1824178	21	2.1	21	84	8	56	33	22	4	40	1.74
1824431--1824492	3	21.0	3	95	3	108	69	0	0	30	0.89
1825069--1825105	2	18.5	2	100	0	74	51	0	0	48	1.00
1825310--1825357	14	3.4	14	85	5	62	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1825299--1825359	14	4.4	14	79	6	61	36	1	0	62	1.05
1825332--1825372	8	5.4	8	85	8	59	43	0	0	56	0.99
1825808--1825849	21	2.0	21	86	13	61	59	0	0	40	0.97
1825795--1825962	90	1.9	89	93	3	293	47	1	2	48	1.25
1827566--1827614	23	2.1	23	100	0	98	32	4	8	55	1.48
1829974--1830144	2	93.5	2	71	21	99	46	2	2	47	1.32
1829974--1830091	29	4.1	28	75	18	93	41	1	4	52	1.31
1829974--1830091	42	2.7	43	81	12	116	41	1	4	52	1.31
1829974--1830145	25	7.4	24	72	14	103	47	2	2	47	1.32
1832525--1832559	2	17.5	2	100	0	70	0	48	0	51	1.00
1836790--1836819	10	3.0	10	90	0	51	46	40	13	0	1.43
1837993--1838054	24	2.8	21	73	17	63	53	0	0	46	1.00
1839212--1839245	5	6.8	5	86	0	50	73	0	26	0	0.83
1839212--1839245	15	2.3	15	100	0	68	73	0	26	0	0.83
1839933--1839993	2	31.0	2	80	3	70	49	6	1	42	1.38
1845669--1845727	29	2.0	29	100	0	118	38	23	13	23	1.91
1847027--1847073	24	2.0	24	82	0	58	17	4	53	25	1.62
1854094--1854216	27	4.7	27	76	6	110	19	12	34	34	1.89
1854365--1854499	68	2.0	68	91	2	218	17	18	17	47	1.83
1859038--1859100	24	2.5	25	82	7	74	20	12	33	33	1.90
1859025--1859151	36	3.8	36	73	18	119	22	12	32	33	1.91
1859025--1859164	63	2.2	63	84	2	174	22	12	31	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1861832--1861922	32	2.9	32	77	6	80	48	2	4	45	1.34
1862061--1862098	16	2.2	18	86	9	53	60	0	0	39	0.97
1862570--1862608	16	2.4	17	86	4	53	38	0	0	61	0.96
1862578--1862611	17	2.1	16	94	5	59	38	0	0	61	0.96
1862643--1862700	30	1.9	30	86	6	82	44	1	3	50	1.29
1862675--1862722	18	2.5	20	77	22	57	56	0	2	41	1.11
1863026--1863080	17	3.3	17	74	5	58	41	0	9	49	1.34
1864299--1864323	6	4.2	6	100	0	50	0	16	0	84	0.63
1864390--1864430	12	3.4	12	96	0	73	17	19	7	56	1.64
1870207--1870262	20	2.7	20	86	10	69	46	14	12	26	1.80
1871306--1871458	52	3.0	51	82	8	175	38	15	20	26	1.91
1871372--1871551	52	3.5	52	78	0	153	38	13	22	25	1.91
1871699--1871855	32	4.8	32	71	10	131	22	14	31	31	1.94
1872034--1872085	16	3.2	16	78	10	61	25	1	1	71	1.07
1872034--1872080	21	2.3	21	85	3	60	23	2	2	72	1.06
1873276--1873300	11	2.3	11	100	0	50	0	8	0	92	0.40
1873825--1873865	21	2.0	21	86	9	59	46	0	9	43	1.36
1875240--1875428	44	4.3	45	76	9	183	40	20	22	17	1.92
1875240--1875426	88	2.1	88	81	8	211	40	20	21	17	1.91
1875408--1875484	35	2.2	35	88	0	109	45	6	24	23	1.76
1875408--1875496	35	2.5	34	80	7	97	43	6	23	25	1.78
1885490--1886022	274	1.9	274	98	0	1021	30	20	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1889408--1889525	51	2.3	51	76	5	139	33	26	8	31	1.86
1889497--1889834	79	4.3	78	77	5	275	27	24	14	34	1.94
1889466--1889834	159	2.3	157	75	5	359	27	24	13	33	1.93
1889703--1889861	79	2.0	77	79	7	167	27	23	11	37	1.90
1891916--1891946	4	7.8	4	100	0	62	22	0	0	77	0.77
1900491--1900567	21	3.7	21	87	3	102	35	11	16	36	1.86
1900603--1900699	19	5.8	18	70	27	88	32	11	17	38	1.85
1900605--1900707	32	3.2	32	95	0	188	33	11	18	36	1.87
1900624--1900680	13	3.9	13	74	24	51	35	12	17	35	1.87
1900751--1900776	13	2.0	13	100	0	52	30	15	15	38	1.88
1900731--1900797	34	2.0	33	88	2	98	25	14	13	46	1.82
1903141--1903579	52	8.4	52	72	11	288	28	25	12	33	1.92
1903593--1903797	79	2.6	79	79	3	207	23	31	17	28	1.97
1906745--1906778	12	2.9	11	91	8	50	88	11	0	0	0.52
1906745--1906779	14	2.5	14	90	9	54	88	11	0	0	0.51
1906745--1906779	16	2.3	16	90	9	56	88	11	0	0	0.51
1907761--1907921	61	2.6	61	90	3	245	23	30	18	27	1.97
1907925--1908554	61	10.6	61	80	7	570	26	25	18	29	1.98
1907950--1908541	121	4.9	122	83	5	631	26	25	18	29	1.98
1908565--1908712	46	3.3	44	72	13	133	18	25	13	41	1.87
1908563--1908833	87	3.2	87	72	10	202	20	25	12	42	1.87
1911898--1911970	28	2.6	28	84	0	110	27	32	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912053--1912129	28	2.8	28	81	0	82	25	29	16	27	1.97
1911884--1912169	159	1.8	157	81	7	355	29	24	13	32	1.93
1912081--1912362	79	3.6	78	78	2	260	28	25	14	31	1.95
1924790--1924822	14	2.5	13	90	9	50	87	12	0	0	0.53
1925816--1925950	61	2.2	61	85	0	189	26	28	20	25	1.99
1925975--1926100	55	2.3	54	82	4	155	29	30	19	21	1.97
1926048--1926521	122	3.9	122	84	6	608	26	26	18	27	1.99
1926048--1926522	183	2.6	182	84	4	627	26	26	18	27	1.98
1926048--1926522	61	7.8	60	82	5	530	26	26	18	27	1.98
1926531--1926686	85	1.8	85	83	5	208	20	24	8	46	1.79
1926700--1926789	41	2.2	40	84	2	108	21	24	10	44	1.82
1929909--1930005	51	1.9	51	93	0	167	32	20	9	37	1.85
1930023--1930297	78	3.5	74	78	11	221	28	22	14	34	1.94
1930038--1930325	157	1.8	157	80	7	343	28	21	13	36	1.92
1930095--1930345	78	3.2	78	81	8	244	28	23	14	34	1.94
1933338--1933409	17	4.2	17	96	0	135	26	23	22	27	1.99
1936157--1936450	148	2.0	147	80	7	337	34	19	20	25	1.96
1936680--1936720	17	2.4	18	84	11	52	21	7	4	65	1.37
1939860--1939919	16	3.7	17	86	6	72	26	0	33	40	1.57
1944219--1944288	16	4.4	16	75	0	68	31	4	28	35	1.77
1944230--1944290	32	1.9	32	89	0	95	34	4	24	36	1.77
1947709--1947806	32	3.1	32	79	8	110	53	9	2	35	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953435--1953461	4	6.8	4	100	0	54	77	0	0	22	0.76
1953721--1953756	18	2.0	18	100	0	72	27	22	5	44	1.75
1953988--1954059	37	1.9	37	97	0	135	36	20	15	27	1.93
1954318--1954387	22	3.2	21	74	21	65	67	0	1	31	1.00
1954519--1954551	6	5.8	6	86	13	52	54	0	0	45	0.99
1954974--1955005	12	2.7	12	90	0	55	18	0	0	81	0.70
1955542--1955592	20	2.5	20	81	9	59	50	0	0	49	1.00
1955606--1955646	14	3.1	14	79	13	50	48	0	0	51	1.00
1955827--1955857	14	2.1	15	94	5	55	35	0	0	64	0.94
1955926--1955988	25	2.4	26	81	5	83	49	1	0	49	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14