genome.fa.s169.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1635 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137727--1137770	22	2.0	22	90	4	70	38	2	0	59	1.10
1137714--1137805	15	6.3	15	72	20	61	46	2	0	51	1.13
1138333--1138364	2	16.0	2	100	0	64	50	0	0	50	1.00
1138487--1138531	20	2.3	21	81	14	60	33	0	0	66	0.92
1138486--1138537	18	2.8	18	81	16	61	34	0	0	65	0.93
1138486--1138537	19	2.8	19	83	11	63	34	0	0	65	0.93
1138687--1138787	37	2.7	37	79	11	100	44	0	0	53	1.13
1139461--1139494	11	2.9	12	86	8	52	32	0	0	67	0.91
1143286--1143315	6	5.0	6	95	0	51	70	0	0	30	0.88
1143666--1143719	18	3.1	19	76	10	53	40	7	0	51	1.30
1143695--1143734	6	6.8	6	88	5	64	35	2	0	62	1.09
1144745--1144782	16	2.4	16	86	4	51	55	0	0	44	0.99
1145747--1145817	22	3.8	18	78	16	65	49	1	2	46	1.25
1145783--1145824	22	1.9	22	90	0	66	52	2	0	45	1.13
1146311--1146353	8	5.4	8	81	10	52	25	0	0	74	0.82
1146311--1146353	17	2.7	16	82	7	52	25	0	0	74	0.82
1146518--1146566	25	2.0	25	84	8	64	40	0	0	59	0.98
1146598--1146661	22	2.8	24	73	20	66	48	0	0	51	1.00
1152467--1152567	24	3.9	27	79	8	93	27	6	15	49	1.70
1152468--1152543	28	2.8	28	84	6	102	28	5	14	51	1.64
1153340--1153407	19	3.9	19	78	21	85	35	11	14	38	1.83
1153342--1153404	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153361--1153385	13	1.9	13	100	0	50	36	16	16	32	1.90
1153447--1153472	13	2.0	13	100	0	52	30	15	15	38	1.88
1153427--1153493	33	2.0	33	88	0	98	25	14	16	43	1.86
1155941--1156013	27	2.7	27	87	6	94	23	34	21	20	1.97
1155996--1156166	51	3.3	51	79	4	198	29	26	11	32	1.92
1156149--1156230	28	2.9	28	80	7	87	24	30	17	28	1.97
1160520--1160555	19	1.9	18	88	5	54	38	2	5	52	1.39
1164010--1164071	29	2.1	29	93	0	106	25	12	9	51	1.70
1165263--1165295	12	2.6	13	90	4	50	45	3	0	51	1.16
1168372--1168421	18	2.6	19	81	12	59	54	0	0	46	1.00
1168456--1168484	6	4.8	6	100	0	58	65	0	0	34	0.93
1168576--1168628	19	2.9	18	83	5	63	60	0	0	39	0.97
1168575--1168633	21	2.8	21	80	12	68	59	0	0	40	0.97
1168579--1168628	25	1.9	25	88	8	73	62	0	0	38	0.96
1181372--1181405	16	2.1	16	100	0	68	50	0	5	44	1.26
1184120--1184170	26	2.0	26	84	0	66	52	0	0	47	1.00
1186504--1186547	9	4.6	9	86	13	61	45	2	2	50	1.27
1186505--1186564	5	11.8	5	77	13	52	45	1	3	50	1.28
1186504--1186564	30	2.0	30	84	12	81	45	1	3	49	1.28
1187018--1187064	16	2.9	16	87	0	58	55	2	4	38	1.31
1187034--1187082	25	1.9	26	84	12	66	59	0	2	38	1.09
1191989--1192026	20	1.9	20	88	0	58	42	31	10	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1196238--1196267	3	10.0	3	100	0	60	33	0	0	66	0.92
1196322--1196366	15	2.9	15	83	16	56	37	0	4	57	1.19
1196403--1196444	20	2.1	20	86	0	57	50	0	0	50	1.00
1196643--1196678	2	18.0	2	100	0	72	50	0	0	50	1.00
1196829--1196883	25	2.2	24	83	9	65	52	0	0	47	1.00
1197247--1197279	17	2.0	17	88	5	50	36	0	0	63	0.95
1197489--1197548	22	2.9	21	78	19	63	53	0	0	46	1.00
1197495--1197533	20	2.0	19	85	14	53	56	0	0	43	0.99
1197515--1197567	21	2.5	22	84	9	65	58	0	0	41	0.98
1197875--1197942	22	2.9	25	81	14	83	52	0	0	47	1.00
1197877--1197942	24	2.9	21	71	20	53	53	0	0	46	1.00
1198555--1198601	10	4.6	10	75	15	51	48	0	0	51	1.00
1198537--1198598	21	3.0	21	81	9	56	48	1	0	50	1.10
1198537--1198601	31	2.1	31	91	0	103	47	1	0	50	1.10
1198583--1198613	15	2.1	15	94	5	55	54	0	0	45	0.99
1198723--1198780	10	6.7	10	68	31	53	53	0	0	46	1.00
1198682--1198794	25	4.4	25	87	8	142	54	0	0	45	0.99
1198729--1198780	16	3.7	16	67	32	55	53	0	0	46	1.00
1198710--1198794	13	6.8	12	80	6	89	55	0	0	44	0.99
1200517--1200570	20	2.7	20	85	8	65	35	9	22	33	1.86
1201232--1201554	161	2.0	161	92	2	542	26	19	12	41	1.86
1206061--1206106	21	2.2	21	84	3	58	60	2	4	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1206802--1206831	14	2.1	14	93	0	51	30	26	0	43	1.55
1210203--1210327	52	2.4	52	94	2	216	29	17	18	34	1.94
1210203--1210347	52	2.8	50	87	8	193	31	17	18	33	1.94
1210336--1210360	13	1.9	13	100	0	50	36	16	16	32	1.90
1210400--1210469	33	2.1	33	89	0	104	40	14	11	34	1.82
1210425--1210449	13	1.9	13	100	0	50	32	16	16	36	1.90
1211190--1211316	67	1.9	68	83	1	166	38	12	24	24	1.90
1211319--1211981	49	13.9	48	82	9	736	30	17	26	25	1.98
1211320--1211986	92	7.1	92	88	5	949	30	17	26	25	1.97
1211760--1211825	22	3.0	22	62	33	52	30	19	22	27	1.98
1211751--1211818	21	3.2	21	65	19	59	30	17	25	26	1.97
1211974--1212047	32	2.4	31	91	6	123	17	16	36	29	1.92
1212034--1212727	34	20.3	34	83	8	756	33	11	33	20	1.89
1212191--1212250	27	2.2	27	87	0	84	28	15	38	18	1.91
1212505--1212917	125	3.2	126	82	10	356	30	14	31	22	1.94
1212700--1212914	31	6.9	30	87	6	236	29	17	29	23	1.97
1212675--1212917	94	2.6	94	85	7	291	29	16	29	23	1.97
1214121--1214161	7	6.1	7	83	11	59	0	0	14	85	0.60
1214118--1214161	19	2.4	19	88	3	63	0	0	13	86	0.57
1214128--1214165	9	4.0	10	83	10	53	0	0	15	84	0.63
1214132--1214172	19	2.2	19	86	0	55	2	2	14	80	0.92
1214118--1214171	26	2.1	26	85	0	72	1	1	12	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1221057--1221183	52	2.4	54	94	2	222	30	17	18	33	1.94
1221057--1221204	52	2.8	51	88	10	201	31	16	18	33	1.93
1221192--1221237	12	4.1	12	74	25	55	32	13	19	34	1.90
1221255--1221324	33	2.1	33	86	0	95	40	14	12	32	1.84
1222058--1222089	14	2.1	16	88	11	50	59	0	3	37	1.13
1223128--1223205	28	2.9	28	85	9	92	23	6	23	47	1.74
1223186--1223231	24	1.9	24	82	8	58	23	8	28	39	1.84
1235115--1235625	34	14.8	32	71	20	147	33	11	33	20	1.90
1235210--1235633	34	12.0	36	77	14	249	34	11	33	21	1.88
1235210--1235706	68	7.1	66	73	17	336	33	11	34	20	1.88
1235799--1235857	31	1.9	31	86	6	84	35	15	27	22	1.94
1237745--1237783	21	1.9	20	84	5	51	41	5	38	15	1.69
1244338--1244385	15	3.0	16	76	17	55	35	4	0	60	1.16
1244576--1244684	27	4.2	25	77	19	91	56	0	0	43	0.99
1244579--1244661	9	9.6	9	68	21	52	54	0	0	45	0.99
1244592--1244694	24	4.2	25	81	10	115	58	0	0	41	0.98
1244949--1244990	17	2.5	17	84	3	50	52	0	0	47	1.00
1244947--1244991	23	2.0	22	82	4	54	53	0	0	46	1.00
1245241--1245279	20	2.0	20	89	0	60	61	2	0	35	1.10
1246376--1246429	20	2.7	20	85	8	65	35	9	22	33	1.86
1247089--1247411	161	2.0	161	92	2	542	26	19	12	41	1.86
1251908--1251953	21	2.2	21	84	3	58	60	2	4	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1252648--1252677	14	2.1	14	93	0	51	30	26	0	43	1.55
1256046--1256170	52	2.4	52	94	2	216	29	17	18	34	1.94
1256046--1256190	52	2.8	50	87	8	193	31	17	18	33	1.94
1256179--1256203	13	1.9	13	100	0	50	36	16	16	32	1.90
1256244--1256313	33	2.1	33	89	0	104	40	14	11	34	1.82
1256269--1256293	13	1.9	13	100	0	50	32	16	16	36	1.90
1257034--1257160	67	1.9	68	83	1	166	38	12	24	24	1.90
1257163--1257825	49	13.9	48	82	9	736	30	17	26	25	1.98
1257164--1257830	92	7.1	92	88	5	949	30	17	26	25	1.97
1257604--1257669	22	3.0	22	62	33	52	30	19	22	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14