genome.fa.s169.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold169
Parameters: 2 7 7 80 10 50 1000
Length:  2015121

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1635 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264244--264303	10	5.6	10	75	14	57	86	6	1	5	0.75
264264--264295	13	2.6	12	90	9	55	90	9	0	0	0.45
264244--264305	21	3.0	20	79	15	63	85	6	1	6	0.80
265534--266663	28	39.6	29	87	5	1508	28	32	17	22	1.96
265533--266663	58	19.8	57	87	4	1520	28	32	17	22	1.96
267272--267365	20	4.7	21	77	7	88	36	10	12	40	1.78
267272--267365	40	2.3	40	81	3	109	36	10	12	40	1.78
268223--268278	23	2.6	21	84	13	78	17	8	8	64	1.48
268229--268277	23	2.2	21	92	7	80	14	6	8	71	1.29
270705--270763	18	3.0	20	76	16	61	28	1	0	69	0.98
270722--270760	20	2.0	20	85	10	53	30	0	0	69	0.89
274081--274129	2	24.5	2	95	0	89	48	2	0	48	1.12
274364--274432	31	2.2	31	87	10	97	53	0	0	46	1.00
275207--275231	2	12.5	2	100	0	50	52	0	0	48	1.00
280575--280607	2	16.5	2	100	0	66	48	0	0	51	1.00
280979--281011	14	2.2	15	89	10	50	81	9	9	0	0.87
280979--281012	15	2.2	16	89	5	52	82	8	8	0	0.85
280979--281013	16	2.2	16	89	0	52	82	8	8	0	0.83
283177--283218	18	2.3	19	83	4	59	59	0	0	40	0.97
283226--283274	23	2.1	23	84	0	62	51	2	2	44	1.24
288473--288517	22	2.0	22	86	0	63	35	2	0	62	1.08
288522--288572	12	4.2	12	74	20	52	33	0	1	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288698--288752	14	4.1	14	77	15	53	61	0	0	38	0.96
288715--288776	19	3.4	19	77	4	65	58	0	0	41	0.98
288697--288777	8	9.6	8	72	18	58	61	0	0	38	0.96
288707--288839	27	4.9	27	71	13	87	60	1	0	37	1.06
291475--291508	2	17.0	2	100	0	68	50	0	0	50	1.00
293361--293596	51	4.7	51	85	3	316	30	18	19	31	1.96
293361--293594	101	2.3	101	92	0	387	30	18	19	31	1.96
298007--298244	51	4.7	51	87	3	329	28	18	21	32	1.96
298007--298241	101	2.3	101	93	2	391	28	18	20	32	1.97
299190--299244	24	2.2	26	83	6	69	38	0	0	61	0.96
299191--299244	28	2.0	28	85	7	76	38	0	0	61	0.96
300163--300201	2	20.0	2	94	5	71	51	0	0	48	1.00
304281--304320	20	2.0	21	85	5	55	37	0	0	62	0.95
311542--311584	19	2.2	19	91	4	68	74	2	2	20	1.04
311766--311800	2	17.5	2	100	0	70	51	0	0	48	1.00
312393--312448	25	2.1	27	81	12	64	23	3	12	60	1.47
313962--313988	4	6.8	4	100	0	54	77	0	0	22	0.76
314035--314077	13	3.4	12	81	9	50	55	2	0	41	1.12
319335--319362	3	9.3	3	100	0	56	67	32	0	0	0.91
320957--321037	32	2.5	32	100	0	162	39	9	6	44	1.63
321034--321080	24	2.0	24	86	0	67	55	2	2	40	1.24
321311--321351	21	2.0	21	85	0	55	17	9	26	46	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321427--321462	2	18.0	2	100	0	72	50	0	0	50	1.00
321655--321699	23	2.0	23	83	16	58	53	0	0	46	1.00
321710--321756	19	2.4	21	86	10	64	59	0	2	38	1.09
322363--322403	16	2.6	16	88	0	64	26	2	0	70	0.99
326816--326869	19	2.8	20	83	8	58	46	3	0	50	1.19
329369--329499	27	4.7	28	75	17	85	40	0	0	58	1.03
331493--331533	2	20.5	2	100	0	82	48	0	0	51	1.00
337339--337389	20	2.6	20	79	14	61	62	0	0	37	0.95
337313--337368	16	3.5	15	73	21	51	60	3	0	35	1.14
337919--337945	3	9.0	3	100	0	54	66	0	0	33	0.92
339150--339180	2	16.0	2	93	6	55	48	0	0	51	1.00
339984--340020	3	12.3	3	100	0	74	32	0	0	67	0.91
340434--340502	22	3.2	21	81	8	77	62	0	0	37	0.96
340463--340508	12	4.1	12	78	13	53	65	0	0	34	0.93
341226--341264	19	2.2	17	86	9	51	48	0	2	48	1.15
346579--346617	10	3.9	10	93	0	60	58	0	0	41	0.98
346579--346617	4	9.8	4	88	0	51	58	0	0	41	0.98
346579--346617	14	2.8	14	92	0	60	58	0	0	41	0.98
347587--347640	26	2.1	26	82	0	63	64	0	1	33	1.04
348093--348136	14	2.7	17	86	13	58	31	0	0	68	0.90
348377--348432	16	3.5	16	78	4	60	64	0	1	33	1.04
348393--348483	26	3.4	27	74	15	82	61	2	2	34	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348502--348584	8	10.4	8	74	19	66	56	1	0	42	1.07
348378--348577	11	18.7	11	65	23	56	59	2	1	38	1.16
348472--348589	27	4.3	28	74	12	95	55	2	0	40	1.19
348522--348619	27	3.5	27	79	12	83	57	2	2	38	1.22
348776--348824	25	2.0	25	84	7	66	46	0	6	46	1.27
348976--349021	19	2.4	19	82	13	51	52	0	0	47	1.00
349675--349743	23	3.0	23	85	4	77	56	0	1	42	1.08
350174--350219	21	2.2	21	88	11	69	52	0	0	47	1.00
350380--350431	18	2.9	18	74	5	52	40	0	0	59	0.97
350448--350500	22	2.5	22	82	14	67	49	0	0	50	1.00
350887--350924	18	2.1	19	90	5	60	31	0	0	68	0.90
350833--351041	107	2.0	108	85	7	295	33	8	4	53	1.52
352230--352256	4	6.8	4	100	0	54	51	22	0	25	1.48
354885--354940	2	29.0	2	78	7	62	44	0	7	48	1.30
356351--356380	2	15.0	2	92	0	51	46	0	0	53	1.00
358666--358696	11	2.8	11	95	0	53	25	19	35	19	1.95
373214--373259	24	1.9	24	95	0	83	47	23	8	19	1.77
373223--373318	27	3.7	27	86	4	117	45	21	10	21	1.82
375195--375240	21	2.1	22	84	4	58	19	30	19	30	1.97
377773--377842	24	2.8	25	83	14	83	45	24	10	20	1.81
377775--377877	27	3.9	27	84	3	122	45	24	9	20	1.81
379500--379548	21	2.4	20	80	12	55	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379510--379551	21	2.0	20	86	13	59	35	0	0	64	0.94
380297--380336	20	2.0	20	95	0	71	25	27	15	32	1.95
390102--390144	19	2.3	19	84	8	52	25	4	2	67	1.22
390176--390256	31	2.7	30	84	7	103	53	0	8	38	1.32
390175--390273	30	3.3	29	80	9	119	48	0	10	41	1.37
390693--390731	19	2.1	19	100	0	78	38	15	0	46	1.46
391067--391158	15	6.1	15	79	8	73	59	0	0	40	0.97
391068--391164	31	3.2	30	71	17	85	57	0	0	42	0.98
391104--391157	28	1.9	28	85	7	74	64	0	0	35	0.94
391417--391448	2	16.0	2	100	0	64	50	0	0	50	1.00
391425--391709	131	2.2	132	96	0	527	29	11	13	45	1.79
394785--394870	30	2.8	31	79	8	97	32	26	6	33	1.83
394792--395032	107	2.2	108	85	6	328	35	23	5	35	1.78
395665--395695	2	15.5	2	100	0	62	51	48	0	0	1.00
396978--397002	2	12.5	2	100	0	50	48	0	0	52	1.00
400718--400754	17	2.3	17	86	9	51	40	0	0	59	0.97
400728--400764	17	2.2	17	90	9	58	35	0	0	64	0.94
402211--402249	21	2.0	20	85	14	55	43	0	2	53	1.14
403663--403950	2	160.0	2	69	25	191	51	0	2	45	1.19
404040--404083	18	2.4	19	88	3	63	20	6	2	70	1.21
407444--408409	89	10.9	89	85	1	1240	31	16	14	36	1.90
408353--408470	61	2.0	60	87	1	173	29	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408410--408955	89	6.3	89	79	5	560	32	17	15	35	1.91
408727--408882	79	2.0	79	88	0	231	33	16	14	34	1.90
409188--409255	20	3.4	20	84	8	102	32	16	13	38	1.87
412620--412662	20	2.2	20	87	4	61	76	6	4	11	1.13
412746--412813	16	4.1	16	77	12	66	39	1	1	57	1.17
412830--412854	13	1.9	13	100	0	50	64	0	0	36	0.94
413021--413054	5	6.6	5	86	6	50	14	0	2	82	0.79
417370--417415	18	2.7	17	83	6	58	26	2	0	71	0.97
421184--421229	21	2.2	20	80	3	56	8	23	2	65	1.32
421350--421406	28	2.1	28	87	6	82	52	0	5	42	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14