Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold212
Parameters: 2 7 7 80 10 50 1000
Length:  1080337

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1126 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1029668--1029751
39
2.2
39
82
10
109
60
2
2
34
1.22
1030871--1030904
16
2.1
16
100
0
68
44
0
0
55
0.99
1031174--1031216
15
2.6
17
85
7
54
48
0
4
46
1.22
1031701--1031802
32
3.0
36
75
18
112
59
0
0
40
0.97
1031707--1031815
37
2.9
36
73
20
96
61
0
0
38
0.96
1039613--1039642
2
15.0
2
92
0
51
46
0
0
53
1.00
1041460--1041522
30
2.1
30
100
0
126
42
3
6
47
1.44
1042301--1042349
18
2.7
19
78
9
57
55
0
0
44
0.99
1042321--1042419
10
9.1
10
70
25
60
48
0
0
51
1.00
1042303--1042419
45
2.7
45
81
14
131
50
0
0
49
1.00
1042346--1042417
21
3.3
21
81
11
65
50
0
0
50
1.00
1042328--1042421
24
4.1
22
76
21
88
47
0
0
52
1.00
1043293--1043349
18
3.3
18
85
7
73
63
0
1
35
1.05
1043757--1043826
5
14.4
5
74
16
58
57
0
2
40
1.14
1043759--1043825
29
2.3
29
82
5
82
58
0
2
38
1.14
1043765--1043837
24
3.0
25
78
11
80
53
0
2
43
1.15
1044399--1044440
12
3.4
13
87
9
61
28
0
0
71
0.86
1044399--1044435
18
2.1
17
90
5
56
29
0
0
70
0.88
1044741--1044770
15
1.9
16
93
6
53
33
0
3
63
1.11
1045026--1045059
10
3.5
10
88
4
52
79
0
0
20
0.73
1044996--1045059
31
2.1
30
82
8
76
71
3
0
25
1.00
1049399--1049612
87
2.6
79
75
12
198
15
49
8
26
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1049504--1049589
36
2.4
36
96
0
154
16
55
8
19
1.65
1049775--1049967
33
5.9
32
87
6
244
15
45
26
12
1.82
1049775--1049961
99
1.9
99
86
4
270
14
47
25
12
1.80
1062346--1062408
24
2.6
25
82
12
78
44
1
0
53
1.10
1063350--1063387
20
2.0
20
90
10
62
68
0
0
31
0.90
1063359--1063425
28
2.4
28
84
2
89
62
2
1
32
1.19
1063994--1064045
3
17.3
3
100
0
104
67
0
0
32
0.91
1065787--1065831
22
2.0
23
86
4
65
42
0
0
57
0.98
1067959--1068007
24
2.0
25
84
4
64
34
0
2
63
1.06
1068107--1068155
21
2.3
21
85
0
62
40
2
0
57
1.10
1068060--1068641
295
2.0
297
94
1
1017
37
8
6
46
1.62
1068402--1068438
11
3.4
11
84
0
56
37
0
0
62
0.96
1072284--1072854
89
6.4
89
83
4
685
35
14
7
43
1.73
1072283--1072854
183
3.2
176
84
4
738
35
14
7
43
1.73
1073539--1073581
22
2.0
22
81
9
52
58
2
0
39
1.11
1073911--1073948
18
2.1
19
90
5
60
60
0
0
39
0.97
1074312--1074336
2
12.5
2
100
0
50
52
0
0
48
1.00
1074738--1074775
19
2.0
19
85
10
51
21
5
21
52
1.66
1075222--1075267
25
1.9
25
86
8
69
60
4
0
34
1.16
1075534--1075563
2
15.0
2
100
0
60
50
0
0
50
1.00
1075662--1075696
14
2.5
15
90
9
56
40
2
0
57
1.14
1079055--1079103
3
16.3
3
100
0
98
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1079997--1080040
22
2.0
22
81
0
52
52
2
0
45
1.13
1080204--1080244
21
2.0
21
85
9
57
70
4
2
21
1.18

Tables:   1   2   3   4   5   6   7   8   9   10

The End!