genome.fa.s212.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold212
Parameters: 2 7 7 80 10 50 1000
Length:  1080337

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321419--321446	4	7.0	4	100	0	56	50	25	0	25	1.50
321444--321492	2	24.5	2	87	8	73	48	2	2	46	1.25
323662--323708	18	2.6	18	93	3	76	51	0	0	48	1.00
323811--323845	16	2.1	17	89	5	54	34	5	0	60	1.21
324554--324586	2	16.5	2	93	0	57	51	0	0	48	1.00
326154--326185	2	16.0	2	93	0	55	46	3	0	50	1.17
327836--327875	10	4.2	9	87	9	53	55	0	0	45	0.99
330316--330348	2	16.5	2	100	0	66	51	0	0	48	1.00
331521--331579	15	3.9	15	78	10	66	54	1	1	42	1.20
331911--332106	98	2.0	98	92	0	329	30	16	18	34	1.93
332542--332592	25	2.2	22	83	16	59	41	0	0	58	0.98
332568--332665	31	3.2	30	75	12	83	46	5	0	47	1.24
332628--332662	17	2.1	17	88	0	52	51	8	0	40	1.33
334228--334266	20	2.0	20	84	0	51	48	0	0	51	1.00
334249--334291	17	2.5	18	81	11	54	53	0	2	44	1.13
334957--334983	7	3.9	7	100	0	54	88	0	0	11	0.50
336082--336115	13	2.5	14	90	9	61	64	0	0	35	0.94
336082--336134	25	2.0	27	82	7	65	62	0	1	35	1.06
336840--336970	28	5.3	23	72	20	88	57	0	1	41	1.08
336881--336938	20	2.8	20	80	12	64	58	0	0	41	0.98
336883--336938	21	2.7	21	76	15	62	58	0	0	41	0.98
336833--336969	19	7.7	18	69	20	83	59	0	1	39	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336884--336969	27	3.2	26	79	12	93	60	0	1	38	1.04
337068--337105	6	6.3	6	93	0	67	18	15	50	15	1.79
337210--337246	14	2.8	14	84	12	51	48	0	0	51	1.00
337641--337670	2	15.0	2	100	0	60	50	0	0	50	1.00
337923--338057	41	3.3	39	73	19	96	45	0	0	54	1.05
341191--341251	30	2.0	32	83	6	81	60	0	3	36	1.13
341240--341290	26	1.9	27	88	4	77	60	0	0	39	0.97
341869--341896	2	14.0	2	100	0	56	50	0	0	50	1.00
343300--343379	20	4.0	21	77	18	82	63	0	0	36	0.94
343304--343365	20	3.0	21	83	9	83	61	0	0	38	0.96
343304--343379	38	1.9	42	86	10	115	63	0	0	36	0.95
344186--344253	28	2.4	30	75	9	70	57	5	1	35	1.32
346637--346680	17	2.6	17	82	10	54	40	0	4	54	1.21
350310--350366	24	2.4	24	80	8	62	52	7	3	36	1.46
351228--351257	2	15.0	2	100	0	60	50	0	0	50	1.00
355325--355372	17	2.8	17	78	12	62	50	2	2	45	1.25
355386--355430	17	2.3	20	82	17	60	62	0	2	35	1.08
355388--355429	19	2.3	19	88	12	61	61	0	2	35	1.09
355895--355920	9	2.9	9	100	0	52	57	0	0	42	0.98
356570--356633	27	2.4	27	82	10	71	37	0	0	62	0.95
356955--357017	8	6.9	9	72	22	51	71	1	0	26	0.95
357299--357339	12	3.5	12	93	6	75	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357300--357362	23	2.9	23	81	15	80	38	0	1	60	1.07
357356--357422	18	3.8	17	70	16	55	46	2	0	50	1.16
357366--357457	36	2.5	38	81	10	95	51	2	0	46	1.13
359447--359609	81	2.0	81	100	0	326	20	25	12	41	1.87
361851--361906	11	4.8	11	73	18	51	39	0	0	60	0.97
363727--363782	22	2.5	22	91	0	85	41	28	1	28	1.66
363822--363882	23	2.7	23	76	2	61	42	19	1	36	1.61
364610--364677	19	3.9	19	78	21	85	35	11	14	38	1.83
364612--364674	32	2.0	32	96	0	117	34	12	15	36	1.86
364631--364655	13	1.9	13	100	0	50	36	16	16	32	1.90
364717--364742	13	2.0	13	100	0	52	30	15	15	38	1.88
364697--364763	33	2.0	33	88	0	98	25	14	16	43	1.86
367226--367294	27	2.5	27	86	6	86	26	30	20	23	1.98
367281--367450	52	3.3	53	80	11	190	29	25	12	32	1.93
367110--367517	212	1.9	212	87	4	597	28	26	13	31	1.94
367170--367589	107	3.9	107	72	9	273	27	27	14	30	1.95
367464--367667	80	2.6	79	81	3	214	24	29	16	29	1.96
379878--379934	12	4.7	12	83	12	71	87	7	5	0	0.66
379878--379950	14	5.2	13	81	15	76	84	5	9	0	0.75
379877--379935	24	2.5	24	82	0	82	84	8	6	0	0.77
379880--379950	8	8.8	8	77	13	56	84	5	9	0	0.77
379878--379934	1	57.0	1	76	0	51	87	7	5	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380910--381205	55	5.4	55	93	3	515	30	30	19	19	1.97
380957--381209	28	9.3	26	62	17	68	29	31	18	20	1.97
380910--381209	165	1.8	164	97	0	573	29	30	19	20	1.97
381745--381812	19	3.9	19	78	21	85	35	11	14	38	1.83
381747--381809	32	2.0	32	96	0	117	34	12	15	36	1.86
381766--381790	13	1.9	13	100	0	50	36	16	16	32	1.90
381852--381877	13	2.0	13	100	0	52	30	15	15	38	1.88
381832--381898	33	2.0	33	88	0	98	26	14	14	43	1.85
384362--384430	27	2.5	27	88	2	93	24	31	21	21	1.98
384306--384700	107	3.7	105	72	11	318	27	27	14	30	1.95
384417--384586	52	3.3	51	77	11	175	29	25	12	32	1.93
384246--384653	212	1.9	212	88	4	624	28	27	13	30	1.94
384600--384803	80	2.6	79	81	3	223	24	29	16	29	1.96
384600--384834	80	2.9	76	76	8	209	25	28	14	31	1.95
390609--390658	25	2.0	26	88	4	75	46	0	0	54	1.00
393710--393768	6	10.3	6	78	14	63	52	0	0	47	1.00
393710--393768	11	5.7	11	75	15	63	52	0	0	47	1.00
394362--394391	2	15.0	2	100	0	60	0	50	0	50	1.00
395100--395134	17	2.1	17	89	10	54	68	2	0	28	1.04
395103--395134	11	2.9	11	95	0	55	71	3	0	25	1.00
395294--395408	52	2.2	52	90	4	180	53	3	0	42	1.17
395318--395413	26	3.6	26	68	8	77	58	4	0	37	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395851--395939	11	7.8	11	72	20	51	31	0	0	68	0.90
395884--395931	18	2.7	19	81	9	57	29	0	0	70	0.87
395858--395937	23	3.5	23	74	16	78	31	0	0	68	0.90
396389--396451	31	2.0	32	81	9	76	44	0	0	55	0.99
397780--397835	22	2.4	22	82	11	58	39	7	3	50	1.47
399071--399109	17	2.2	18	86	4	53	38	7	2	51	1.44
399169--399247	21	3.6	22	77	17	83	34	2	3	59	1.29
399187--399252	24	2.8	24	79	4	71	34	1	4	59	1.27
399169--399254	24	3.7	23	72	18	65	33	2	3	60	1.26
399669--399710	16	2.6	16	75	14	50	66	0	0	33	0.92
400257--400316	29	2.1	27	84	9	75	45	1	0	53	1.10
400260--400360	30	3.3	30	74	17	93	39	4	2	52	1.38
400242--400360	61	1.9	61	81	11	145	44	4	2	48	1.35
405072--405104	10	3.3	10	91	0	57	45	0	0	54	0.99
405041--405100	5	12.2	5	73	8	52	45	0	0	55	0.99
410841--410866	2	13.0	2	100	0	52	50	0	0	50	1.00
414918--415176	50	5.2	50	91	0	412	29	21	18	30	1.97
419573--419831	50	5.2	50	90	0	394	29	20	18	30	1.97
419573--419831	100	2.6	100	94	1	439	29	20	18	30	1.97
419985--420017	15	2.2	15	89	10	50	30	0	3	66	1.06
419980--420027	24	2.0	24	84	8	62	31	0	4	64	1.12
420675--420716	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421144--421202	31	2.0	29	83	6	73	47	0	1	50	1.11
421846--421887	20	2.0	20	86	9	57	50	2	0	47	1.14
423276--423314	21	1.9	20	89	5	60	43	5	10	41	1.61
423483--423513	16	1.9	16	100	0	62	48	0	0	51	1.00
423932--423974	21	2.1	20	91	4	68	48	0	0	51	1.00
423941--423982	17	2.3	18	80	16	50	50	0	0	50	1.00
424218--424256	5	7.6	5	85	2	51	33	0	7	58	1.26
424218--424251	10	3.4	10	95	0	59	32	0	5	61	1.20
424605--424637	13	2.5	14	85	14	52	72	0	0	27	0.85
425227--425273	18	2.6	19	75	18	55	59	0	4	36	1.17

Tables:   1   2   3   4   5   6   7   8   9   10