genome.fa.s212.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold212
Parameters: 2 7 7 80 10 50 1000
Length:  1080337

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561909--561939	10	3.2	10	90	9	55	67	0	0	32	0.91
562230--562297	13	5.0	13	73	16	57	63	0	4	32	1.14
562235--562300	19	3.2	20	77	18	64	65	0	3	31	1.08
562248--562303	23	2.5	23	75	21	64	67	0	1	30	1.01
562767--562820	27	2.0	28	88	3	83	48	0	1	50	1.11
563111--563166	20	2.7	21	78	18	64	55	1	0	42	1.10
563111--563155	19	2.4	19	79	13	58	55	0	0	44	0.99
563475--563530	29	2.0	29	85	3	78	39	1	0	58	1.08
565404--565432	7	4.3	7	91	8	51	0	13	0	86	0.58
565408--565432	13	1.9	13	100	0	50	0	12	0	88	0.53
565838--565891	25	2.2	24	81	12	65	37	3	0	59	1.15
565847--565896	13	3.8	13	77	17	50	36	4	0	60	1.16
566283--566307	10	2.5	10	100	0	50	72	0	0	28	0.86
572546--572575	15	2.0	15	93	0	51	43	0	0	56	0.99
574756--574782	2	13.5	2	100	0	54	51	0	0	48	1.00
575155--575192	3	12.7	3	100	0	76	68	0	0	31	0.90
575378--575402	3	8.3	3	100	0	50	68	0	0	32	0.90
575806--575841	2	18.0	2	100	0	72	50	0	0	50	1.00
576007--576090	7	11.7	7	77	14	64	53	2	1	42	1.21
576037--576090	14	3.9	14	85	0	72	50	1	0	48	1.11
576024--576090	21	3.1	21	84	2	80	52	2	0	44	1.16
576864--576901	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579846--580118	141	1.9	141	87	1	404	37	17	15	29	1.91
581045--581080	18	1.9	19	88	5	56	33	13	27	25	1.94
581427--581471	23	1.9	24	86	4	65	35	2	0	62	1.08
581414--581502	15	5.7	15	69	25	51	39	1	0	59	1.05
581435--581511	23	3.4	23	71	16	72	37	1	0	61	1.05
581971--582010	12	3.3	12	82	0	53	47	10	2	40	1.50
582494--582535	12	3.1	15	77	22	56	42	0	0	57	0.99
586346--586465	18	7.1	16	69	20	59	50	0	0	49	1.00
586338--586391	16	3.2	16	84	12	65	42	0	0	57	0.98
586391--586466	23	3.3	23	73	15	59	55	0	0	44	0.99
586368--586470	35	3.0	35	78	16	92	53	0	0	46	1.00
586437--586478	18	2.2	20	87	8	61	50	2	0	47	1.14
586562--586630	14	4.5	17	71	28	57	34	0	0	65	0.93
586571--586617	23	2.0	24	88	12	71	31	0	0	68	0.90
586572--586632	20	3.0	21	81	11	72	32	0	0	67	0.91
586563--586628	33	2.0	33	85	5	89	33	0	0	66	0.92
588770--588810	18	2.3	18	87	8	57	34	0	2	63	1.08
589087--589135	14	3.6	14	81	15	66	40	0	0	59	0.98
595728--595798	2	35.5	2	100	0	142	50	0	0	49	1.00
595963--596014	27	1.9	27	84	7	70	44	1	0	53	1.11
596303--596349	17	2.7	17	77	9	51	65	2	2	29	1.15
596953--596986	16	2.1	16	88	0	50	61	0	5	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603267--603296	15	1.9	16	93	6	53	53	0	0	46	1.00
604022--604053	2	16.0	2	100	0	64	50	0	0	50	1.00
604938--604994	20	2.7	21	78	10	64	56	0	0	43	0.99
604986--605051	5	13.6	5	76	12	57	54	1	0	43	1.09
604973--605039	34	2.0	34	87	0	98	61	1	0	37	1.05
605643--605696	27	2.0	28	86	10	78	44	0	0	55	0.99
607168--607209	22	1.9	22	90	9	68	61	0	0	38	0.96
607183--607267	25	3.2	25	75	11	64	52	1	0	45	1.08
607382--607448	33	2.0	33	100	0	134	34	8	20	35	1.84
607950--608015	26	2.6	25	75	17	66	53	0	0	46	1.00
610052--610118	31	2.2	31	81	5	73	53	4	0	41	1.21
610662--610713	14	3.4	14	73	19	50	46	0	0	53	1.00
610662--610709	16	3.0	16	75	19	55	45	0	0	54	0.99
610657--610759	19	5.5	20	71	26	75	41	0	0	57	1.05
610692--610759	20	3.3	20	79	10	66	39	1	0	58	1.07
611483--611562	32	2.4	32	74	21	74	52	0	0	47	1.00
611770--611825	27	2.1	27	93	0	94	19	28	26	25	1.99
612092--612116	12	2.1	12	100	0	50	48	0	0	52	1.00
612163--612204	14	2.8	16	78	10	52	38	0	2	59	1.10
612103--612204	41	2.5	40	77	13	109	39	1	0	57	1.16
612258--612317	16	3.6	18	70	22	51	40	0	0	60	0.97
612642--612701	19	3.3	19	68	13	54	53	1	1	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613835--613895	26	2.3	26	80	8	61	52	3	0	44	1.17
614056--614085	5	6.0	5	100	0	60	40	0	0	60	0.97
614110--614171	29	2.1	30	84	3	81	50	0	1	48	1.10
614141--614227	38	2.3	39	76	15	92	45	4	4	44	1.44
614586--614627	22	1.9	22	90	9	68	42	0	0	57	0.99
614615--614672	21	2.8	20	73	21	57	62	0	0	37	0.96
614982--615097	28	3.9	29	73	18	105	62	0	0	37	0.95
615021--615119	8	12.8	8	73	10	80	59	0	0	40	0.97
615021--615092	15	4.5	16	73	21	62	59	0	0	40	0.97
615048--615117	15	4.8	16	81	11	62	55	0	0	44	0.99
615301--615344	23	2.0	22	86	4	61	43	0	0	56	0.99
615343--615386	23	1.9	23	86	9	63	40	0	0	59	0.98
617601--617636	18	1.9	19	88	5	56	41	0	0	58	0.98
617607--617644	18	2.1	18	85	9	51	47	0	0	52	1.00
618091--618122	4	8.0	4	92	0	55	21	0	25	53	1.46
619843--619911	33	2.1	33	88	0	102	24	20	23	31	1.98
620156--620220	23	2.8	23	73	17	62	46	0	0	53	1.00
620178--620245	28	2.5	28	69	9	68	44	0	0	55	0.99
621352--621388	15	2.4	17	86	13	53	59	0	0	40	0.97
621435--621562	27	4.4	27	74	21	82	58	0	0	41	0.98
621448--621537	31	2.8	32	81	11	105	55	0	0	44	0.99
621450--621529	16	5.1	15	71	17	56	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621441--621562	9	13.6	9	72	22	57	57	0	0	42	0.98
621441--621562	31	3.7	35	71	22	93	57	0	0	42	0.98
621902--621974	37	2.0	37	83	5	94	36	8	9	45	1.67
622047--622086	21	1.9	21	85	10	55	42	2	5	50	1.37
623846--623877	15	2.1	15	94	0	55	43	0	0	56	0.99
625712--625779	16	4.2	16	74	20	52	60	0	0	39	0.97
626292--626362	19	3.5	19	75	17	70	33	1	1	63	1.12
626287--626365	21	3.8	20	73	17	70	34	1	1	63	1.11
626475--626540	34	2.0	33	82	11	82	33	1	3	62	1.20
626741--626788	20	2.3	21	75	3	53	60	4	2	33	1.27
627451--627493	22	2.0	22	95	0	77	53	4	2	39	1.34
627582--627624	14	2.8	16	79	17	54	58	2	0	39	1.11
627582--627622	5	8.2	5	86	8	57	58	2	0	39	1.11
627936--627992	30	1.9	29	85	3	78	52	1	0	45	1.11
629853--629922	29	2.5	28	86	11	99	42	0	0	57	0.99
629886--629926	21	1.9	21	85	5	55	43	0	0	56	0.99
629863--629964	29	3.5	28	73	15	82	41	0	0	56	1.12
629959--630003	18	2.4	17	82	17	54	40	0	0	60	0.97
629871--629997	60	2.1	61	81	7	143	42	0	0	55	1.10
630121--630150	15	2.0	15	100	0	60	53	0	0	46	1.00
630514--630549	18	1.9	19	88	5	56	36	0	0	63	0.94
630525--630585	15	4.0	15	72	19	63	36	1	1	60	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631060--631119	21	2.8	21	84	2	75	70	3	1	25	1.12
633287--633380	15	6.6	15	67	9	54	42	0	1	56	1.06
633296--633421	36	3.5	37	73	18	140	42	0	0	56	1.05
633269--633425	70	2.3	70	93	3	264	40	0	1	57	1.06
634773--634802	5	5.8	5	92	7	51	76	0	0	23	0.78
634773--634802	11	2.9	10	90	9	51	76	0	0	23	0.78
635372--635396	11	2.3	11	100	0	50	64	0	0	36	0.94
635396--635435	17	2.4	17	91	4	64	47	0	0	52	1.00
636525--636556	12	2.8	12	90	9	50	34	0	0	65	0.93
636566--636626	13	4.8	13	78	13	56	60	3	1	34	1.23

Tables:   1   2   3   4   5   6   7   8   9   10