genome.fa.s212.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold212
Parameters: 2 7 7 80 10 50 1000
Length:  1080337

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145620--145654	17	2.1	17	88	0	52	65	0	0	34	0.93
147982--148025	2	22.0	2	90	0	70	47	47	2	2	1.27
149451--149481	8	3.9	8	95	0	53	0	38	0	61	0.96
149938--149968	4	7.8	4	92	0	53	22	3	0	74	0.96
150974--151038	31	2.0	31	85	5	85	18	6	9	66	1.41
152202--152280	28	2.9	27	77	15	74	12	13	2	70	1.26
152209--152260	14	3.6	15	76	7	54	9	13	3	73	1.23
160505--160584	20	3.9	21	72	26	64	50	2	2	45	1.28
160583--160645	16	3.9	16	80	12	67	52	7	1	38	1.40
161379--161421	22	2.0	22	90	0	68	67	2	11	18	1.32
163020--163083	29	2.2	29	86	13	89	64	1	1	32	1.13
163283--163321	2	19.5	2	100	0	78	48	0	0	51	1.00
164655--164716	28	2.2	29	80	8	74	45	0	0	54	0.99
165110--165161	5	10.0	5	79	8	59	42	0	0	57	0.98
165697--165811	57	2.0	57	91	0	185	20	20	30	28	1.98
167964--168062	24	4.3	23	76	11	69	42	4	1	52	1.27
168008--168088	22	3.6	22	76	14	60	48	1	0	50	1.08
169222--169264	21	2.0	22	81	9	52	39	2	0	58	1.11
170030--170056	2	13.5	2	100	0	54	48	0	0	51	1.00
170534--170573	2	20.0	2	100	0	80	50	0	0	50	1.00
169858--170872	521	2.0	499	91	4	1634	42	12	8	36	1.73
176684--176712	9	3.2	9	100	0	58	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181224--181301	31	2.5	33	81	10	92	50	0	0	50	1.00
181237--181301	32	2.0	32	85	11	89	50	0	0	49	1.00
181224--181331	31	3.4	31	75	16	89	49	0	0	50	1.00
181479--181530	19	2.8	18	72	13	52	48	0	1	50	1.12
184474--184503	2	15.0	2	100	0	60	50	0	0	50	1.00
185414--185449	3	12.0	3	93	0	63	33	63	0	2	1.08
185831--186148	159	2.0	159	93	0	537	26	15	19	38	1.91
187106--187137	2	16.0	2	100	0	64	50	0	0	50	1.00
190189--190262	23	3.3	23	64	17	64	21	9	14	54	1.69
190186--190276	45	2.0	45	100	0	182	21	8	13	56	1.64
202589--202631	9	5.0	9	80	8	54	55	0	0	44	0.99
203245--203291	19	2.5	20	82	10	62	51	2	2	44	1.25
207457--207494	17	2.2	18	90	4	60	28	0	13	57	1.36
207463--207501	17	2.2	17	86	4	51	23	5	10	61	1.48
210705--210768	26	2.5	25	82	7	67	35	10	12	40	1.78
210947--210979	2	16.5	2	100	0	66	48	0	0	51	1.00
212507--212546	21	1.9	21	89	0	62	27	0	2	70	1.01
214890--214956	2	33.5	2	96	0	62	37	0	11	50	1.39
218989--219042	27	2.0	27	82	3	65	40	11	9	38	1.73
226754--226791	13	3.0	13	84	3	51	44	2	0	52	1.14
228127--228156	3	9.7	3	92	7	51	63	0	0	36	0.95
229534--229564	2	15.5	2	100	0	62	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231079--231123	20	2.1	21	88	8	65	33	2	0	64	1.06
231070--231117	24	1.9	26	83	8	64	35	0	0	64	0.94
232647--232681	2	17.0	2	88	5	52	51	0	2	45	1.16
235232--235265	2	17.0	2	100	0	68	50	0	0	50	1.00
236618--236660	2	21.5	2	100	0	86	48	0	0	51	1.00
236865--236913	23	2.1	24	84	3	64	44	0	4	51	1.20
237040--237076	2	18.5	2	88	0	56	45	0	0	54	1.00
237040--237081	12	3.5	12	90	0	66	42	0	2	54	1.13
242365--242399	12	2.9	12	91	0	52	60	0	40	0	0.97
243022--243061	2	19.5	2	84	5	53	42	0	2	55	1.13
244307--244336	2	15.0	2	100	0	60	50	0	0	50	1.00
246230--246261	3	10.7	3	100	0	64	31	0	0	68	0.90
246675--246704	15	1.9	16	93	6	53	60	3	0	36	1.14
249051--249082	2	16.0	2	100	0	64	50	0	0	50	1.00
250435--250461	2	13.5	2	100	0	54	48	0	0	51	1.00
250666--250714	23	2.1	24	84	3	64	44	0	4	51	1.20
250841--250877	2	18.5	2	88	0	56	45	0	0	54	1.00
250841--250882	12	3.5	12	90	0	66	42	0	2	54	1.13
256167--256201	12	2.9	12	91	0	52	60	0	40	0	0.97
258111--258136	2	13.0	2	100	0	52	50	0	0	50	1.00
260020--260051	3	10.7	3	100	0	64	31	0	0	68	0.90
260465--260494	15	1.9	16	93	6	53	60	3	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262851--262894	2	22.0	2	100	0	88	50	0	0	50	1.00
263512--263544	2	16.0	2	93	6	57	48	3	0	48	1.17
264261--264285	2	12.5	2	100	0	50	48	0	0	52	1.00
264676--264716	2	20.5	2	100	0	82	51	0	48	0	1.00
265201--265239	11	3.4	11	83	13	51	61	5	0	33	1.18
266801--266842	20	2.1	21	91	8	70	54	7	0	38	1.28
266785--266873	44	2.0	45	88	2	135	53	4	5	35	1.45
274371--274428	18	3.4	17	80	17	50	43	1	0	55	1.10
274644--274696	18	2.9	19	84	15	69	58	0	0	41	0.98
275082--275115	2	17.0	2	100	0	68	50	0	0	50	1.00
276000--276028	13	2.2	13	100	0	58	68	0	0	31	0.89
276009--276067	26	2.4	25	81	13	61	67	3	0	28	1.06
276009--276086	20	3.7	20	75	6	66	67	2	0	29	1.03
276003--276071	29	2.4	29	83	13	81	68	2	0	28	1.04
279585--279647	16	4.0	16	75	22	62	38	1	0	60	1.07
279578--279631	27	2.0	27	85	3	72	42	0	0	57	0.98
279756--279819	32	1.9	34	84	12	89	46	1	0	51	1.10
281510--281547	2	19.0	2	100	0	76	50	0	0	50	1.00
283634--283664	12	2.6	12	94	0	53	48	6	0	45	1.28
284511--284555	2	22.5	2	95	0	81	51	0	0	48	1.00
286709--286735	2	13.5	2	100	0	54	48	0	0	51	1.00
287064--287118	20	2.7	20	78	10	58	58	1	1	38	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287110--287196	15	5.9	15	69	23	51	50	0	1	48	1.08
287144--287194	20	2.6	20	78	12	61	58	0	0	41	0.98
287520--287561	19	2.1	21	86	8	61	54	0	0	45	0.99
287517--287563	19	2.3	20	82	14	60	53	0	0	46	1.00
289567--289628	21	3.0	21	79	11	58	48	1	0	50	1.10
289833--289866	6	5.3	6	86	13	50	20	0	0	79	0.73
289810--289868	14	4.4	14	76	24	65	27	0	0	72	0.84
289811--289870	24	2.5	22	79	15	66	25	0	0	75	0.81
289810--289871	18	3.5	17	73	20	56	27	0	0	72	0.85
290174--290203	13	2.4	13	94	5	53	63	0	0	36	0.95
290181--290241	11	5.9	11	74	18	51	60	0	0	39	0.97
290171--290236	24	2.8	24	81	6	64	62	0	0	37	0.96
290179--290247	29	2.4	29	83	9	79	59	0	0	40	0.97
290165--290220	12	4.5	13	82	10	64	64	0	0	35	0.94
290200--290246	24	2.0	24	87	8	69	55	0	0	44	0.99
290272--290312	20	2.0	21	86	13	59	60	0	0	39	0.96
291050--291091	21	2.0	20	86	4	57	47	2	0	50	1.14
291049--291101	23	2.3	24	75	24	60	45	3	0	50	1.19
292288--292315	12	2.3	12	100	0	56	21	0	0	78	0.75
292551--292598	17	2.8	17	81	9	62	60	0	0	39	0.97
299322--299380	30	2.0	30	100	0	118	40	33	10	15	1.81
304097--304127	2	15.5	2	100	0	62	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304805--304855	19	2.6	20	81	9	61	58	1	0	39	1.09
305882--305916	9	3.9	9	84	0	52	88	0	11	0	0.51
306327--306358	16	2.1	16	94	5	57	62	0	6	31	1.20
311735--311768	16	2.1	16	100	0	68	44	0	11	44	1.40
312122--312158	2	18.5	2	100	0	74	48	0	0	51	1.00
312929--313003	35	2.2	35	81	11	84	61	1	1	36	1.13
312937--313003	35	1.9	35	84	6	91	59	0	1	38	1.06
313233--313269	2	18.5	2	100	0	74	48	0	0	51	1.00
318595--318632	2	19.0	2	100	0	76	50	0	50	0	1.00
319297--320011	394	1.8	392	82	3	934	37	19	17	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10