genome.fa.s212.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold212
Parameters: 2 7 7 80 10 50 1000
Length:  1080337

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  6  of  10  ( 1126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638639--638688	23	2.2	23	85	7	66	44	0	2	54	1.11
638924--638986	25	2.6	24	80	11	76	63	1	0	34	1.04
640618--640669	27	1.9	27	84	7	70	57	1	1	38	1.21
641426--641488	31	2.0	32	84	9	85	42	0	1	55	1.09
641471--641521	26	2.0	26	88	7	77	50	0	0	49	1.00
641486--641536	18	2.8	19	76	8	61	52	0	0	47	1.00
641581--641614	17	2.1	17	94	5	61	41	0	0	58	0.98
641779--641813	2	18.0	2	94	5	63	48	0	51	0	1.00
642906--642930	7	3.6	7	100	0	50	48	12	40	0	1.40
644329--644401	17	4.5	17	73	15	64	43	0	1	54	1.08
644734--644775	22	2.0	21	86	13	59	54	2	2	40	1.26
650287--650332	21	2.1	22	84	11	60	56	0	0	43	0.99
650619--650693	37	2.0	37	87	10	109	52	0	0	48	1.00
651607--651631	3	8.3	3	100	0	50	68	0	0	32	0.90
652963--653019	16	3.3	18	74	20	50	54	1	0	43	1.10
652963--653026	33	1.9	34	87	6	96	54	1	0	43	1.09
653014--653059	20	2.3	20	88	7	67	47	8	4	39	1.54
653162--653206	15	2.9	16	80	6	56	62	0	0	37	0.96
653207--653274	27	2.4	28	83	11	86	63	0	4	32	1.14
653183--653305	38	3.2	37	76	16	101	61	1	4	32	1.24
653644--653676	10	3.4	10	91	4	50	51	0	0	48	1.00
654005--654043	19	2.2	17	86	9	51	30	0	2	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654771--654821	15	3.2	16	83	10	61	31	3	7	56	1.46
655910--655959	18	2.8	18	81	6	57	40	0	6	54	1.25
658105--658152	3	16.0	3	100	0	96	66	0	0	33	0.92
659636--659666	13	2.4	13	100	0	62	48	6	0	45	1.28
660040--660084	20	2.2	20	84	7	56	62	0	2	35	1.08
661251--661308	2	29.5	2	81	10	66	50	1	5	43	1.35
665656--665702	20	2.3	20	75	7	51	59	0	0	40	0.97
665986--666040	27	2.0	29	82	13	71	54	1	7	36	1.39
666202--666254	13	4.2	13	75	15	58	67	3	0	28	1.07
666203--666254	18	2.9	17	76	20	52	67	3	0	28	1.08
666201--666252	24	2.2	24	86	6	70	65	3	0	30	1.10
666486--666529	22	2.0	23	86	4	63	50	4	0	45	1.22
667614--667659	2	23.0	2	95	0	83	0	52	0	47	1.00
672235--672303	33	2.0	33	86	5	93	46	0	0	53	1.00
673068--673106	18	2.2	17	86	13	53	28	0	0	71	0.86
678283--678353	33	2.2	33	94	0	124	36	19	18	25	1.94
678477--678502	3	8.7	3	100	0	52	30	0	0	69	0.89
679964--680007	14	3.0	14	80	6	52	50	2	4	43	1.35
679964--680027	29	2.2	30	83	13	80	50	1	3	45	1.27
680127--680159	3	11.0	3	100	0	66	33	0	0	66	0.92
680270--680341	32	2.2	33	82	2	83	51	2	4	41	1.35
680967--681022	16	3.2	16	75	22	51	53	10	35	0	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681017--681073	22	2.6	22	83	5	80	57	14	22	5	1.56
686242--686324	43	2.0	41	81	9	96	51	0	1	46	1.08
686573--686713	40	3.5	40	75	15	96	37	0	2	60	1.09
686603--686698	17	5.3	18	71	20	67	38	0	1	60	1.04
686565--686694	59	2.2	57	82	9	165	36	0	1	61	1.05
687139--687186	22	2.2	22	85	3	62	64	2	2	31	1.16
687872--687913	21	2.1	20	86	8	59	54	0	0	45	0.99
688174--688227	21	2.6	21	83	11	67	42	0	1	55	1.10
688199--688251	27	2.0	27	81	7	63	45	0	1	52	1.11
688431--688462	10	3.1	11	86	13	50	56	0	0	43	0.99
688430--688462	16	2.1	16	88	11	50	54	0	0	45	0.99
689332--689428	27	3.5	28	74	13	76	40	1	0	58	1.05
689399--689463	29	2.2	29	77	0	76	41	0	0	58	0.98
689421--689475	29	2.0	28	82	13	69	52	0	0	47	1.00
689696--689743	13	3.5	13	78	10	51	62	0	0	37	0.95
689672--689726	26	2.0	28	86	6	78	56	0	1	41	1.10
689694--689744	20	2.6	19	84	12	59	64	0	0	35	0.94
689706--689763	13	4.1	15	82	8	52	67	1	1	29	1.11
689686--689749	26	2.5	26	82	5	67	64	0	0	35	0.94
689709--689749	13	3.2	13	92	0	64	68	0	0	31	0.90
690417--690446	2	15.0	2	100	0	60	50	0	0	50	1.00
691026--691066	21	2.0	21	90	9	66	56	2	2	39	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692011--692047	12	3.0	12	92	4	56	32	0	0	67	0.91
693153--693199	22	2.2	21	85	11	60	46	2	4	46	1.34
693578--693646	8	7.9	8	72	22	50	40	0	0	59	0.97
693573--693693	53	2.2	54	81	10	140	40	1	0	57	1.15
693581--693646	35	2.0	33	85	8	89	42	0	0	57	0.98
693799--693857	13	4.7	13	71	21	54	44	0	3	52	1.17
693803--693860	21	2.7	22	76	23	70	43	0	3	53	1.17
694189--694223	17	2.1	17	89	10	54	11	25	5	57	1.56
694960--695031	29	2.5	28	78	19	76	33	0	4	62	1.14
695257--695292	17	2.2	16	90	5	54	61	5	2	30	1.33
696045--696069	2	12.5	2	100	0	50	48	0	0	52	1.00
696334--696376	17	2.6	16	77	7	50	58	0	0	41	0.98
697294--697568	145	1.9	147	81	5	342	45	8	12	34	1.71
699382--699447	32	2.0	32	81	18	75	63	1	0	34	1.04
699423--699474	18	3.0	17	81	10	52	51	0	3	44	1.19
702533--702613	25	3.4	26	69	28	65	50	0	0	49	1.00
702538--702616	22	3.5	22	68	25	58	50	0	0	49	1.00
702547--702604	21	2.7	21	84	12	66	56	0	0	43	0.99
702609--702659	18	2.8	18	83	13	68	50	1	0	47	1.12
702649--702679	15	2.1	15	93	0	53	48	3	0	48	1.17
703822--703870	20	2.6	18	79	17	55	44	2	0	53	1.12
704766--704812	16	2.9	16	76	17	53	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717568--717625	29	2.0	29	89	0	89	53	0	1	44	1.10
719589--719647	31	1.9	32	83	10	79	47	0	1	50	1.11
719867--719906	19	2.0	20	85	4	55	67	0	0	32	0.91
723692--723724	15	2.1	16	88	5	50	33	0	6	60	1.21
723787--723836	17	2.9	17	72	16	50	42	0	0	58	0.98
723944--723974	3	10.7	3	93	6	55	70	0	0	29	0.87
724237--724268	16	2.0	16	100	0	64	50	0	0	50	1.00
724226--724329	37	2.8	36	79	13	104	39	0	3	55	1.24
724410--724443	8	4.1	8	88	7	50	82	0	2	14	0.79
724408--724443	17	2.1	17	89	0	54	80	0	2	16	0.83
724920--724984	25	2.6	25	73	2	69	47	0	0	52	1.00
725154--725235	39	2.1	39	90	0	128	30	18	20	30	1.96
726850--726959	11	9.5	11	73	18	89	62	0	1	35	1.06
726841--726958	5	24.8	5	75	18	85	61	0	1	36	1.06
726841--726955	34	3.3	35	72	15	87	61	0	1	36	1.06
726875--726959	36	2.4	35	81	15	95	61	0	2	36	1.09
727086--727202	11	10.5	11	73	14	89	62	0	1	35	1.11
727086--727163	31	2.7	31	76	20	80	61	0	1	37	1.04
727103--727150	18	2.8	18	79	14	57	64	0	2	33	1.05
727117--727202	5	17.4	5	73	15	63	61	1	2	34	1.16
726731--727215	244	2.0	243	89	2	742	51	4	10	32	1.58
729775--729833	28	2.1	29	84	15	79	45	3	0	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729757--729833	29	2.7	29	82	11	79	49	5	0	45	1.24
730539--730597	29	2.0	29	87	6	84	44	1	1	52	1.21
731814--731872	29	2.1	28	81	15	68	52	0	1	45	1.10
732153--732242	29	3.0	29	86	4	117	57	11	6	24	1.57
739033--739080	22	2.0	25	84	11	66	50	0	2	47	1.12
739084--739122	16	2.5	16	87	4	53	53	5	0	41	1.23
739204--739240	3	12.7	3	94	5	67	64	0	0	35	0.94
739239--739263	3	8.3	3	100	0	50	32	0	0	68	0.90
739515--739565	3	17.0	3	95	0	93	64	0	1	33	1.05
739516--739571	9	6.2	9	95	0	67	60	0	5	33	1.19

Tables:   1   2   3   4   5   6   7   8   9   10