genome.fa.s212.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold212
Parameters: 2 7 7 80 10 50 1000
Length:  1080337

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425433--425480	14	3.5	13	85	8	51	64	0	0	35	0.94
425432--425523	15	6.0	15	70	25	59	64	1	0	34	1.01
425446--425495	24	2.0	24	84	11	64	64	0	0	36	0.94
425453--425503	20	2.6	19	84	9	66	66	0	0	33	0.92
425548--425599	14	3.6	14	82	7	61	59	0	0	40	0.97
427603--427639	18	2.0	19	89	5	58	70	0	0	29	0.88
428154--428187	17	2.0	17	88	0	50	26	2	0	70	1.01
432222--432262	2	20.5	2	100	0	82	0	48	0	51	1.00
432847--432871	8	3.1	8	100	0	50	48	12	0	40	1.40
438047--438075	12	2.3	13	94	5	51	65	3	24	6	1.33
438356--438412	22	2.6	22	84	13	66	38	0	3	57	1.16
438315--438520	15	13.7	15	74	13	88	43	0	1	54	1.12
438370--438442	28	2.6	28	80	2	76	43	0	1	54	1.08
438437--438516	10	7.8	10	75	17	58	43	0	1	55	1.08
438529--438578	16	3.1	17	71	11	50	30	12	6	52	1.62
439384--439457	15	4.9	14	74	23	62	59	0	1	39	1.06
439398--439485	25	3.5	25	80	10	81	56	0	1	42	1.06
439767--439862	43	2.2	43	79	5	104	59	0	3	37	1.13
439804--439866	25	2.5	25	74	5	65	65	0	0	34	0.93
439782--439848	22	3.1	22	70	4	57	56	0	2	40	1.14
441715--441773	19	3.1	18	78	9	55	52	1	0	45	1.10
447784--447822	18	2.1	18	90	4	60	35	0	2	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453785--453846	22	2.9	23	75	18	62	43	0	0	56	0.99
454540--454582	13	3.1	14	83	10	61	55	0	0	44	0.99
455041--455151	30	3.7	30	84	2	141	39	2	2	54	1.29
455794--455819	2	13.0	2	100	0	52	50	0	0	50	1.00
456291--456327	13	2.9	13	81	18	51	13	0	0	86	0.57
462890--462931	5	8.8	5	87	10	52	47	0	0	52	1.00
462888--462994	4	25.0	4	75	16	65	49	0	0	49	1.07
462888--462995	9	12.0	9	72	16	82	49	0	0	50	1.07
462897--462994	51	1.9	52	83	10	130	50	0	1	48	1.07
462929--462995	17	3.9	18	73	19	56	49	0	1	49	1.10
463278--463318	2	20.5	2	100	0	82	48	0	0	51	1.00
463475--463541	33	2.0	33	100	0	134	32	11	11	43	1.78
466241--466270	14	2.1	14	93	0	51	46	0	3	50	1.18
467963--467989	14	1.9	14	100	0	54	48	0	0	51	1.00
467993--468074	30	2.8	30	82	15	102	42	0	0	57	0.98
467975--468066	34	2.8	35	73	23	92	40	1	1	57	1.13
468020--468089	18	3.6	19	80	14	72	38	0	2	58	1.13
473412--473450	19	2.1	19	85	9	53	51	0	0	48	1.00
474315--474360	23	2.0	23	86	0	65	50	0	0	50	1.00
481061--481104	13	3.5	13	81	9	56	65	0	2	31	1.05
486922--487253	110	3.0	110	97	0	619	38	16	21	23	1.93
488898--488930	17	2.0	17	88	5	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490400--490424	2	12.5	2	100	0	50	48	0	0	52	1.00
490832--490868	2	18.5	2	100	0	74	48	0	0	51	1.00
492959--493001	22	2.0	22	86	9	61	41	0	0	58	0.98
492931--493001	34	2.1	34	84	5	90	42	0	0	57	0.98
493346--493399	11	4.1	13	72	27	51	70	1	1	25	1.07
493343--493399	29	2.0	29	82	6	71	71	1	1	24	1.04
493404--493463	31	1.9	32	89	3	95	56	0	1	41	1.09
496606--496663	31	1.9	30	82	10	73	55	0	1	43	1.10
496673--496703	16	1.9	16	93	0	53	61	6	0	32	1.21
497626--497662	2	19.0	2	94	5	67	48	0	0	51	1.00
500228--500257	2	15.0	2	100	0	60	50	0	0	50	1.00
500392--500416	9	2.8	9	100	0	50	48	20	0	32	1.50
502707--502731	5	5.0	5	100	0	50	80	0	0	20	0.72
503693--503802	55	2.0	55	98	0	211	37	18	16	28	1.92
506706--506749	18	2.4	18	85	10	63	59	0	0	40	0.98
508213--508409	79	2.5	78	80	3	223	28	23	10	37	1.88
511036--511185	75	2.0	75	98	0	291	22	26	21	30	1.99
511213--511288	11	7.0	11	68	12	50	52	1	0	46	1.08
511343--511388	19	2.3	20	82	14	60	39	0	0	60	0.97
511350--511424	19	4.2	17	83	11	89	44	0	0	56	0.99
511769--511839	17	4.0	18	77	14	76	32	2	1	63	1.18
512755--512823	27	2.6	27	81	9	70	27	5	4	62	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
512804--512858	23	2.5	22	82	5	67	32	1	0	65	1.03
512802--512862	11	5.4	12	77	13	67	32	1	0	65	1.02
512882--512941	14	4.4	14	80	16	63	43	0	0	56	0.99
513320--513412	13	6.4	15	74	14	72	56	0	2	40	1.11
513337--513426	30	3.3	27	71	17	78	57	0	1	41	1.06
513743--513795	23	2.3	23	71	12	54	62	9	7	20	1.50
514562--514673	59	1.9	59	83	5	147	50	5	12	32	1.63
515065--515107	22	2.0	22	86	9	61	58	16	0	25	1.38
515401--515430	14	2.2	13	94	5	51	3	6	0	90	0.56
515778--515810	17	2.0	17	88	5	50	54	0	0	45	0.99
515931--515970	18	2.2	18	86	8	55	52	0	0	47	1.00
520065--520222	79	2.0	80	91	1	255	28	15	27	29	1.96
526642--526675	14	2.5	13	86	9	50	41	0	2	55	1.15
527978--528010	7	4.7	7	100	0	66	87	0	0	12	0.53
528000--528039	6	6.7	6	91	0	62	82	0	15	2	0.77
527978--528016	14	2.8	14	92	0	51	84	0	5	10	0.76
528200--528250	22	2.3	22	83	16	70	37	0	0	62	0.95
529111--529171	16	3.9	16	78	16	65	52	3	0	44	1.17
529159--529197	19	2.1	19	85	9	53	53	0	0	46	1.00
529112--529197	16	5.1	18	70	22	53	52	2	0	45	1.13
529211--529267	20	2.8	20	76	7	53	50	0	1	47	1.11
529425--529464	17	2.4	17	91	8	64	60	0	40	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529516--529624	42	2.7	40	76	16	93	33	0	1	64	1.05
529615--529672	14	3.4	19	69	30	67	37	3	3	55	1.34
529603--529683	31	2.6	31	100	0	162	38	2	2	56	1.26
529503--529706	98	2.1	98	79	9	213	36	1	3	58	1.24
530164--530208	19	2.3	20	84	3	56	53	0	0	46	1.00
535490--535524	2	18.0	2	94	5	63	48	0	0	51	1.00
536757--536795	2	19.5	2	100	0	78	51	0	0	48	1.00
537019--537082	6	11.7	6	71	18	59	53	0	0	46	1.00
537019--537080	16	3.9	16	95	0	115	54	0	0	45	0.99
538154--538197	22	2.0	22	82	8	54	63	0	0	36	0.95
539379--539428	22	2.5	20	81	15	50	64	4	0	32	1.12
539708--539824	50	2.3	49	78	16	114	53	0	0	45	1.06
540414--540503	36	2.4	38	75	18	91	48	1	2	47	1.21
541772--541865	31	2.9	33	76	12	97	39	1	0	59	1.04
541769--541867	52	1.9	52	83	4	128	37	1	0	61	1.03
542236--542265	14	2.1	15	93	6	53	43	0	0	56	0.99
543398--543445	2	25.0	2	87	8	73	45	0	0	54	0.99
546177--546214	15	2.3	17	86	13	53	44	0	5	50	1.24
546554--546607	26	2.1	26	82	6	65	33	0	5	61	1.19
546569--546637	19	3.5	20	79	13	72	34	1	2	60	1.20
546654--546699	19	2.5	19	85	3	58	54	0	4	41	1.20
547246--547298	27	2.0	26	82	10	63	39	1	3	54	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548150--548183	2	17.5	2	93	6	61	50	0	0	50	1.00
548384--548468	27	3.3	26	68	26	74	58	0	0	41	0.98
554554--554594	20	2.1	19	86	4	55	24	2	0	73	0.96
554831--554858	2	14.0	2	100	0	56	50	0	0	50	1.00
556167--556199	16	2.1	16	88	5	50	48	0	0	51	1.00
556185--556268	31	2.6	33	79	12	93	44	0	0	55	0.99
556175--556281	27	4.0	26	70	23	78	43	0	0	56	0.99
556801--556828	2	14.0	2	100	0	56	50	0	0	50	1.00
561123--561180	30	1.9	30	89	0	89	53	0	6	39	1.28
561583--561621	20	2.0	20	84	0	51	69	0	2	28	1.02

Tables:   1   2   3   4   5   6   7   8   9   10