genome.fa.s212.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold212
Parameters: 2 7 7 80 10 50 1000
Length:  1080337

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  8  of  10  ( 1126 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850452--850518	27	2.5	27	77	15	77	50	0	0	49	1.00
851578--851630	19	2.9	18	81	10	54	41	0	0	58	0.98
851601--851642	17	2.4	18	84	11	61	45	0	0	54	0.99
851675--851739	24	2.6	24	85	9	69	56	0	7	35	1.28
851771--851804	10	3.3	10	91	4	50	67	0	2	29	1.05
851774--851808	11	3.3	11	88	4	54	62	0	2	34	1.10
852522--852590	11	5.9	12	74	16	65	69	1	0	28	0.97
852526--852590	23	2.8	24	82	13	82	69	1	0	29	0.98
852526--852590	12	5.5	13	73	23	63	69	1	0	29	0.98
853154--853186	2	16.5	2	100	0	66	48	0	0	51	1.00
858058--858105	2	24.0	2	95	0	87	47	0	0	52	1.00
858680--858722	23	2.0	21	86	9	59	32	0	2	65	1.06
858721--858765	14	3.3	15	76	20	53	48	4	0	46	1.22
858693--858795	52	2.0	53	82	5	129	43	3	1	50	1.31
858814--858893	26	3.2	25	72	15	74	36	6	10	47	1.62
859563--859604	17	2.4	17	84	11	50	23	0	7	69	1.13
859582--859685	27	3.9	26	72	15	88	27	1	0	69	1.06
859571--859672	53	2.0	51	80	7	116	27	0	1	69	1.05
859599--859684	17	4.8	17	73	8	57	27	2	0	69	1.00
859927--859985	23	2.6	23	89	5	84	42	13	6	37	1.71
859937--859985	11	4.4	11	76	5	53	38	14	6	40	1.71
860557--860592	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860977--861793	404	2.0	404	98	0	1580	46	8	9	35	1.67
862027--862072	24	1.9	24	90	0	74	45	0	2	52	1.13
862028--862084	24	2.3	24	81	3	60	49	0	1	49	1.11
862754--862779	2	13.0	2	100	0	52	50	0	0	50	1.00
863148--863185	18	2.1	18	95	0	67	50	0	0	50	1.00
864354--864395	2	21.0	2	100	0	84	50	0	0	50	1.00
864705--864754	21	2.4	20	80	6	55	64	4	4	28	1.30
865101--865138	18	2.1	19	85	9	53	31	0	0	68	0.90
865593--865645	19	2.6	21	85	11	67	54	0	0	45	0.99
866010--866054	23	2.0	23	82	8	56	46	0	0	53	1.00
866231--866312	31	2.6	32	76	9	87	58	0	0	41	0.98
866920--866965	21	2.2	20	85	11	58	36	2	2	58	1.22
867577--867626	20	2.5	21	87	6	77	44	0	2	54	1.11
867583--867621	12	3.6	11	83	16	55	48	0	2	48	1.15
869197--869236	19	2.1	20	90	9	66	37	2	0	60	1.11
870484--870512	2	14.5	2	100	0	58	48	0	0	51	1.00
875504--875533	14	2.1	14	100	0	60	30	23	13	33	1.93
877727--877786	30	2.0	30	83	6	77	65	1	0	33	1.03
878773--878831	29	2.0	29	83	6	75	50	0	1	47	1.11
885408--885465	27	2.1	27	83	0	71	12	20	37	29	1.89
887047--887086	21	1.9	21	90	10	64	55	0	0	45	0.99
887047--887084	18	2.0	20	85	15	53	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887125--887231	56	1.9	56	98	0	205	28	16	28	25	1.97
887699--887743	19	2.4	19	84	0	63	80	4	0	15	0.87
887701--887742	6	6.8	6	83	5	57	80	2	0	16	0.81
888425--888459	18	1.9	18	94	0	61	34	0	11	54	1.37
891600--891641	2	21.0	2	100	0	84	50	0	0	50	1.00
891745--891780	2	18.0	2	100	0	72	50	0	0	50	1.00
897088--897128	21	2.0	20	86	13	57	78	7	12	2	1.06
897825--897849	11	2.3	11	100	0	50	84	0	8	8	0.79
905543--906749	27	44.0	27	89	2	1721	23	33	14	29	1.94
905543--906749	55	22.0	54	89	2	1721	23	33	14	29	1.94
905543--906749	82	14.7	81	88	2	1707	23	33	14	29	1.94
906732--906967	32	7.4	32	93	0	402	30	34	19	16	1.93
906979--907289	32	9.7	32	90	4	455	29	33	19	17	1.95
906897--907049	82	1.9	82	92	0	261	27	32	22	16	1.96
906801--907289	178	2.9	174	91	5	759	29	33	20	16	1.94
906979--907275	130	2.3	131	90	3	451	29	33	20	16	1.95
906981--907289	162	1.9	163	90	1	494	30	33	19	16	1.94
908514--908570	17	3.2	17	75	15	53	77	0	21	1	0.86
908549--908573	11	2.3	11	100	0	50	92	0	8	0	0.40
918750--918803	20	2.7	20	91	8	92	40	12	14	31	1.84
924158--924192	15	2.3	15	95	0	61	11	2	57	28	1.48
924182--924246	18	3.8	18	74	12	73	7	7	56	27	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924212--924252	15	2.7	15	92	0	64	9	9	53	26	1.65
925918--926023	51	2.1	51	90	0	167	36	25	9	28	1.87
926810--926834	3	8.3	3	100	0	50	32	36	0	32	1.58
932487--932517	14	2.2	14	94	0	53	25	0	0	74	0.82
932476--932514	16	2.2	19	86	13	57	25	0	5	69	1.09
932562--932604	21	2.0	22	81	4	52	41	0	0	58	0.98
932539--932615	33	2.3	33	82	6	84	44	0	0	55	0.99
932572--932618	19	2.5	20	82	6	62	36	0	0	63	0.94
933072--933137	19	3.4	19	77	8	71	68	0	0	31	0.90
933076--933144	27	2.4	27	81	18	79	69	0	0	30	0.89
933073--933144	9	8.6	9	69	25	50	69	0	0	30	0.89
933076--933133	31	1.9	30	86	10	82	68	0	0	31	0.89
933464--933501	19	2.1	19	85	5	51	68	5	0	26	1.11
934299--934358	24	2.5	24	73	10	59	45	8	0	46	1.33
934584--934628	19	2.4	19	85	7	56	55	0	4	40	1.20
934591--934631	19	2.1	20	90	4	66	51	0	4	43	1.23
934605--934657	25	2.2	24	86	3	70	43	0	1	54	1.11
934619--934671	19	2.9	18	78	15	65	41	0	0	58	0.98
934619--934675	18	3.1	18	72	20	55	42	0	0	57	0.98
934678--934707	10	2.9	10	95	5	51	66	0	0	33	0.92
934874--934930	22	2.6	22	84	13	82	38	0	0	61	0.96
934874--934934	23	2.7	23	80	12	74	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936380--936911	270	2.0	266	87	4	775	35	8	33	22	1.85
944673--944712	11	3.4	11	81	18	53	55	0	0	45	0.99
944758--944826	28	2.5	27	81	6	77	43	2	2	50	1.32
945760--945813	23	2.5	21	78	21	58	42	0	0	57	0.98
945760--945828	22	3.2	22	76	23	67	46	0	0	53	1.00
945952--945995	20	2.3	19	81	14	54	56	2	2	38	1.24
948872--948897	6	4.3	6	100	0	52	15	0	0	84	0.62
948981--949025	3	15.0	3	100	0	90	66	0	0	33	0.92
949116--949153	17	2.3	17	86	4	51	63	0	7	28	1.23
949172--949227	29	1.9	29	85	7	78	51	0	10	37	1.37
949523--949565	16	2.7	16	81	0	50	55	0	0	44	0.99
949834--949880	20	2.3	21	85	3	60	27	2	2	68	1.13
950112--950162	27	1.9	26	84	11	68	33	1	1	62	1.17
950233--950280	23	2.1	23	84	0	60	39	4	6	50	1.47
951674--951734	3	20.3	3	100	0	122	67	0	0	32	0.91
956341--956397	25	2.2	25	93	3	96	38	1	3	56	1.27
956656--956699	2	22.0	2	95	0	79	50	2	0	47	1.13
956907--956941	17	2.1	17	88	0	52	60	11	0	28	1.32
957561--957610	14	3.5	14	84	10	57	42	2	0	56	1.11
957562--957610	15	3.4	15	86	10	59	42	2	0	55	1.11
957697--957861	21	7.6	22	67	21	73	40	0	0	60	0.97
957714--957780	30	2.2	30	86	5	89	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957748--957806	16	3.4	18	75	15	61	44	0	0	55	0.99
957732--957852	25	4.6	27	76	18	112	41	0	0	58	0.98
957719--957835	54	2.1	54	81	15	132	42	0	0	57	0.98
957742--957826	20	4.6	19	73	20	65	43	0	0	56	0.99
957765--957863	19	5.4	19	68	26	63	41	0	0	58	0.98
957799--957866	22	3.1	22	74	17	63	38	0	0	61	0.96
957724--957863	53	2.5	57	75	17	145	41	0	0	58	0.98
958370--958425	24	2.3	24	78	9	60	39	0	5	55	1.23
958746--958794	15	3.3	14	78	13	53	44	0	0	55	0.99
958855--958903	21	2.5	19	76	20	55	32	2	0	65	1.04

Tables:   1   2   3   4   5   6   7   8   9   10