Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold22
Parameters: 2 7 7 80 10 50 1000
Length:  1926927

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1216 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1890873--1890937
13
5.0
13
80
0
85
30
16
18
33
1.94
1890872--1890937
26
2.5
26
97
0
123
31
16
18
33
1.93
1893338--1893364
13
2.1
13
100
0
54
29
14
14
40
1.86
1900842--1900880
20
2.0
20
94
0
69
43
20
15
20
1.88
1900872--1900933
32
1.9
33
87
9
92
29
20
16
33
1.94
1902937--1902989
20
2.6
19
82
8
52
16
13
1
67
1.31
1902937--1903232
156
1.9
159
83
4
393
27
14
9
47
1.75
1903439--1903464
5
5.2
5
100
0
52
19
0
0
80
0.71
1903782--1903818
11
3.3
12
85
14
53
81
0
18
0
0.70
1903779--1903818
10
3.9
10
96
3
71
77
0
22
0
0.77
1911968--1912015
22
2.2
22
82
10
55
72
6
12
8
1.26
1913097--1913163
33
2.0
33
88
0
98
34
11
13
40
1.81
1913117--1913141
13
1.9
13
100
0
50
36
16
16
32
1.90
1913204--1913228
13
1.9
13
100
0
50
32
16
16
36
1.90
1913237--1913360
52
2.4
52
94
1
214
35
18
17
28
1.94
1917479--1917505
10
2.7
10
100
0
54
0
0
22
77
0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!