genome.fa.s22.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold22
Parameters: 2 7 7 80 10 50 1000
Length:  1926927

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470009--470150	63	2.2	63	83	6	169	21	23	14	40	1.90
470483--470628	65	2.2	65	84	2	177	17	21	17	43	1.88
470413--470823	194	2.1	195	78	6	431	18	22	18	40	1.91
477029--477151	60	2.0	62	90	3	196	29	17	14	39	1.89
479336--479461	50	2.5	49	81	7	146	29	23	10	37	1.88
479337--479461	49	2.5	50	80	7	146	29	23	9	37	1.86
479418--479776	79	4.5	79	80	4	359	27	25	13	33	1.94
479403--479776	158	2.4	158	79	5	402	27	25	13	33	1.93
482156--482213	19	3.0	20	73	16	59	37	15	13	32	1.87
482197--482221	13	1.9	13	100	0	50	32	16	16	36	1.90
483571--483865	79	3.7	78	79	7	292	35	11	23	29	1.90
486315--486368	20	2.6	21	82	2	65	33	14	9	42	1.78
488076--488257	64	2.9	62	75	7	168	39	15	14	30	1.87
489557--489612	19	2.9	18	82	10	67	30	16	16	37	1.90
492793--492846	20	2.6	21	82	2	65	42	9	14	33	1.78
492811--492866	20	2.7	21	80	5	60	41	12	16	30	1.85
495274--495550	79	3.5	76	81	6	279	29	24	10	35	1.89
496874--496898	13	1.9	13	100	0	50	36	16	16	32	1.90
496883--496938	19	3.0	20	79	10	64	33	12	16	37	1.86
662772--662828	19	3.0	20	82	7	73	35	15	15	33	1.90
662874--662903	13	2.3	13	94	0	51	36	16	10	36	1.82
662857--662925	33	2.1	32	84	10	86	31	13	17	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669388--669763	156	2.4	156	82	6	456	39	20	15	23	1.91
669388--669813	156	2.7	157	82	5	436	39	20	16	23	1.92
671409--671452	18	2.5	17	82	13	54	0	20	0	79	0.73
671408--671453	20	2.4	19	86	13	67	0	19	0	80	0.71
672056--672362	166	1.9	164	82	5	397	49	9	9	31	1.68
673633--673673	14	3.0	14	89	3	57	24	7	9	58	1.55
676161--676725	157	3.6	157	85	1	747	39	21	16	23	1.92
676738--677116	155	2.5	154	82	5	469	37	22	17	22	1.94
677534--677567	13	2.8	12	87	12	52	20	2	0	76	0.92
678582--678631	13	4.1	12	78	19	50	0	24	0	76	0.80
678581--678629	12	4.1	11	80	15	53	0	22	0	77	0.77
680529--680849	155	2.1	155	80	5	353	38	19	16	25	1.92
680566--680853	155	1.9	154	83	3	373	37	19	17	26	1.93
681006--681489	138	3.5	140	82	7	554	42	10	11	35	1.75
682615--683193	165	3.5	164	83	4	695	49	9	11	29	1.70
682616--683264	330	2.0	328	82	7	787	50	9	11	28	1.69
682615--683283	165	4.1	164	81	6	680	50	9	11	28	1.69
684921--684980	23	2.6	22	74	7	57	56	10	10	23	1.62
685330--685522	78	2.5	77	79	7	219	34	8	26	30	1.86
685274--685655	79	4.8	78	76	8	294	33	9	26	29	1.89
687963--688078	51	2.3	51	83	5	146	43	12	10	33	1.77
688932--689055	37	3.0	43	71	17	125	41	14	25	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688902--689055	82	1.9	82	86	8	224	42	13	25	18	1.87
691289--691315	13	2.1	13	100	0	54	29	14	14	40	1.86
691270--691333	33	2.0	32	87	3	92	29	15	15	39	1.89
692973--693009	3	12.3	3	94	0	65	37	0	32	29	1.58
694955--694994	9	4.9	8	85	14	55	82	2	2	12	0.87
694957--694994	16	2.4	16	91	8	60	84	2	2	10	0.83
695412--695519	52	2.1	52	93	3	184	26	10	12	50	1.71
699419--699574	20	7.7	20	79	11	167	33	20	11	34	1.89
699411--699575	41	4.0	41	89	4	237	32	20	11	35	1.89
703797--703822	13	2.0	13	100	0	52	38	15	15	30	1.88
703779--703842	32	2.0	33	87	3	94	40	17	14	28	1.88
707891--707921	15	2.1	15	93	0	53	48	16	22	12	1.80
709983--710008	13	2.0	13	100	0	52	30	15	15	38	1.88
710130--710172	20	2.2	19	84	16	52	30	20	4	44	1.72
712554--712579	13	2.0	13	100	0	52	38	15	15	30	1.88
712536--712599	32	2.0	33	87	3	94	40	17	14	28	1.88
715045--715108	20	3.5	20	72	27	79	37	12	12	37	1.81
715044--715121	33	2.4	33	97	0	147	37	12	11	38	1.80
717002--717127	43	2.9	44	82	8	134	42	0	30	26	1.61
717760--717809	20	2.5	20	87	3	66	34	16	14	36	1.88
719499--719991	79	6.2	79	81	4	555	29	25	11	34	1.91
719520--719994	159	3.0	159	85	3	634	28	26	11	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719499--719989	238	2.1	238	87	1	698	28	25	11	34	1.91
729576--729618	13	3.3	13	96	0	77	34	13	18	32	1.90
729663--729717	19	2.8	20	88	5	85	36	18	14	30	1.91
730304--730349	23	2.1	23	88	8	69	43	19	4	32	1.71
732032--732073	20	2.0	22	86	9	61	50	0	21	28	1.49
740966--741003	13	2.9	14	84	11	53	36	15	15	31	1.90
741035--741072	20	1.9	20	100	0	76	36	13	10	39	1.79
747890--748004	51	2.3	50	89	1	176	46	11	14	26	1.79
748457--748494	13	2.8	13	92	4	58	23	0	0	76	0.79
748458--748501	20	2.2	20	91	0	70	22	0	0	77	0.77
748455--748519	7	9.1	7	89	3	85	21	0	1	76	0.86
752439--752480	19	2.3	18	84	8	50	83	9	4	2	0.88
753477--754042	61	9.4	59	80	8	511	27	26	17	28	1.97
754644--754740	41	2.4	40	84	1	122	30	20	8	40	1.82
754621--754739	20	5.8	20	80	5	123	32	19	7	40	1.80
754620--754738	61	1.9	62	83	5	152	33	19	7	39	1.80
756875--756913	20	2.1	19	85	9	53	23	15	10	51	1.73
757470--757657	37	5.0	37	72	11	130	42	15	20	21	1.89
757459--757657	38	5.2	38	72	17	108	43	15	21	20	1.88
757446--757590	77	1.9	77	83	8	188	42	14	22	20	1.88
757349--757657	114	2.7	119	80	7	309	40	15	22	21	1.90
757607--757701	44	2.2	44	84	3	120	46	12	25	15	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757658--758238	37	15.0	38	69	13	290	37	15	26	20	1.92
757579--757731	81	1.9	79	81	6	182	38	15	24	22	1.92
757488--757881	117	3.4	114	78	7	348	39	15	23	21	1.91
757729--757924	77	2.5	80	77	9	204	37	15	25	21	1.93
757538--758242	194	3.6	194	82	6	794	38	15	25	20	1.92
757920--758011	44	2.1	44	84	6	116	45	11	23	18	1.83
757799--758041	117	2.1	112	79	8	256	37	15	25	21	1.93
757937--758122	80	2.3	81	80	2	214	38	16	24	20	1.92
757972--758251	116	2.4	116	82	8	329	38	16	25	18	1.92
758087--758242	80	2.0	75	81	9	179	41	14	25	19	1.89
764585--764889	78	3.9	79	77	6	264	36	11	23	28	1.90
774011--774080	33	2.1	33	89	0	104	27	17	15	40	1.90
774044--774101	20	2.9	20	87	5	82	27	18	13	39	1.89
774031--774061	13	2.4	13	94	0	53	29	12	16	41	1.85
776393--776622	51	4.5	51	84	1	293	28	23	13	35	1.92
776560--776855	79	3.7	79	81	0	286	27	25	15	32	1.95
778913--778939	4	6.8	4	100	0	54	22	0	0	77	0.76
787666--787846	79	2.3	79	82	5	206	29	16	29	24	1.96
787802--787872	28	2.5	28	86	4	90	23	18	35	22	1.96
787864--787994	52	2.5	51	82	3	163	32	11	25	29	1.91
790306--790357	20	2.6	20	100	0	104	38	13	21	26	1.90
790411--790462	13	3.5	13	73	26	50	36	17	13	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790419--790481	19	3.7	18	74	24	64	36	15	12	34	1.86
790411--790483	32	2.3	32	95	0	128	35	16	12	35	1.86
790450--790511	19	3.2	19	69	13	54	27	14	14	43	1.84
795610--795637	13	2.2	13	100	0	56	39	17	14	28	1.89
795592--795657	33	2.0	33	85	5	89	42	13	13	30	1.83
795689--795751	19	3.6	19	76	24	84	34	19	12	33	1.89
795683--795751	32	2.2	32	100	0	138	36	18	11	33	1.87
795708--795732	13	1.9	13	100	0	50	32	16	16	36	1.90
796929--797058	1	130.0	1	66	0	53	82	11	5	0	0.87
796930--797045	7	16.6	7	76	13	98	81	12	4	0	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11