genome.fa.s274.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold274
Parameters: 2 7 7 80 10 50 1000
Length:  1642345

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322346--322742	129	3.1	130	80	6	430	28	25	12	33	1.92
322605--322904	158	1.9	158	83	5	392	28	25	12	34	1.92
322858--322956	51	1.9	51	83	4	128	31	26	10	32	1.89
322763--323036	130	2.1	130	83	5	340	29	25	11	33	1.91
322893--323079	79	2.4	79	81	6	209	27	27	12	32	1.93
324081--324191	58	1.9	59	81	9	138	33	13	9	43	1.77
326796--326857	30	2.0	31	84	9	83	37	14	17	30	1.90
326819--326886	36	1.9	35	84	3	91	45	11	16	26	1.81
328743--328776	7	4.7	7	96	3	59	0	14	0	85	0.60
330968--331187	79	2.8	80	76	10	234	34	13	23	28	1.93
331171--331395	79	2.9	77	82	3	254	34	13	24	27	1.93
331001--331523	208	2.5	208	85	3	692	35	13	23	28	1.92
331254--331527	129	2.1	129	82	3	327	32	13	24	29	1.93
331326--331446	51	2.3	52	81	1	154	28	12	28	29	1.93
334271--334370	39	2.5	40	83	1	139	39	18	14	29	1.89
334249--334445	38	5.1	39	76	5	161	40	14	16	29	1.87
335310--335387	39	2.0	39	87	5	113	37	20	12	29	1.90
335818--335880	16	3.9	16	83	6	65	11	14	30	44	1.79
335827--335906	16	5.0	16	81	6	74	12	13	31	42	1.82
335827--335906	32	2.5	32	82	8	99	12	13	31	42	1.82
335935--335979	16	2.9	15	75	18	56	17	11	33	37	1.85
344267--344771	176	2.9	175	77	5	419	42	10	7	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344661--344705	6	6.7	7	85	14	60	55	0	0	44	0.99
344661--344705	20	2.3	19	85	14	56	55	0	0	44	0.99
344661--344705	14	3.4	14	82	17	60	55	0	0	44	0.99
344267--344771	182	2.9	178	73	8	480	42	10	7	39	1.69
344940--345029	16	5.7	15	75	8	63	42	32	18	6	1.77
345944--346001	24	2.4	24	91	5	91	27	10	24	37	1.88
346359--346409	16	3.2	16	77	5	50	52	23	11	11	1.70
346432--346467	16	2.2	16	90	0	54	38	33	16	11	1.84
349944--349989	2	23.0	2	79	16	51	50	2	2	45	1.26
352989--353037	18	2.6	19	76	17	57	38	0	0	61	0.96
352973--353025	28	1.9	27	88	3	79	41	0	0	58	0.98
353002--353035	10	3.3	11	88	12	54	32	0	0	67	0.91
352999--353087	24	3.8	24	75	16	73	34	0	2	62	1.07
353051--353129	32	2.5	32	73	8	79	35	0	5	59	1.19
353250--353280	16	1.9	16	100	0	62	64	3	0	32	1.09
353682--353716	14	2.4	15	90	4	54	68	0	0	31	0.90
353689--353723	18	1.9	18	88	11	54	65	0	0	34	0.93
353731--353765	7	4.9	7	92	3	52	40	0	2	57	1.14
354114--354185	21	3.2	21	70	22	56	34	0	5	59	1.21
354120--354191	25	3.0	25	78	17	89	34	0	6	58	1.25
354124--354258	40	3.2	40	72	21	114	33	0	5	60	1.21
356119--356721	32	20.2	28	81	8	426	21	16	31	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356114--356419	115	2.6	115	86	5	386	22	14	31	31	1.94
356579--356807	56	4.0	57	82	5	189	30	15	27	26	1.96
356712--356808	27	3.6	27	87	1	122	35	11	26	26	1.90
356646--357052	28	14.7	27	73	5	296	30	14	29	25	1.95
356764--357033	55	4.9	54	74	8	143	32	13	30	24	1.94
356738--357052	83	3.8	83	85	1	402	31	13	29	25	1.94
358335--358384	20	2.6	19	75	6	55	4	12	10	74	1.21
366198--366250	16	3.4	16	84	10	83	62	0	28	9	1.26
366915--366953	15	2.6	15	83	0	51	43	0	0	56	0.99
367079--367122	10	4.3	10	78	16	54	36	11	27	25	1.90
367120--367144	13	1.9	13	100	0	50	36	16	16	32	1.90
368341--368432	31	3.0	31	88	1	123	32	22	17	27	1.96
369269--369297	15	2.0	15	93	6	51	55	0	0	44	0.99
370441--370745	75	4.1	75	82	5	311	56	12	2	29	1.49
370542--370757	72	2.9	72	78	10	240	55	12	3	29	1.52
370767--370796	7	4.3	7	95	0	51	23	0	0	76	0.78
370988--371049	26	2.3	27	86	2	81	25	6	16	51	1.68
371380--371410	2	15.5	2	100	0	62	48	0	0	51	1.00
371647--371673	2	13.5	2	100	0	54	51	0	0	48	1.00
372753--372807	7	8.1	7	81	18	64	56	0	0	43	0.99
372767--372801	18	2.0	18	94	5	63	60	0	0	40	0.97
372970--373129	77	2.1	77	88	5	236	30	10	12	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373323--373370	20	2.5	20	80	10	55	52	0	0	47	1.00
373847--373964	50	2.3	51	83	1	148	30	16	10	43	1.81
376319--376506	96	2.0	96	81	4	227	29	25	9	36	1.87
377995--378020	13	2.0	13	100	0	52	30	23	15	30	1.95
378096--378151	21	2.6	22	88	5	96	39	10	23	26	1.87
378139--378169	10	3.1	10	90	0	53	41	6	29	22	1.78
378194--378329	53	2.5	53	93	1	227	27	16	18	36	1.93
378299--378369	20	3.5	20	77	11	74	29	12	16	40	1.86
378935--378964	8	3.6	8	95	4	51	13	13	3	70	1.30
379646--379698	20	2.6	21	78	6	63	39	11	16	32	1.85
385432--385586	70	2.2	71	88	4	226	29	15	12	42	1.84
385485--385532	20	2.4	20	92	0	78	31	12	12	43	1.80
387905--388161	79	3.3	78	79	6	250	26	24	15	32	1.96
393363--393393	12	2.6	12	89	0	53	90	9	0	0	0.46
394348--394409	30	2.1	30	81	6	72	20	30	14	33	1.93
394416--395365	61	15.6	61	79	6	883	24	24	19	31	1.98
394415--395365	184	5.2	185	81	6	951	24	24	19	31	1.98
394415--395360	122	7.8	123	84	5	1046	24	24	19	31	1.98
395361--395752	45	9.1	44	74	12	255	20	28	10	40	1.86
395402--395502	41	2.3	43	81	10	125	18	31	9	39	1.84
395361--395746	212	1.8	213	89	1	605	20	28	11	39	1.87
395333--395684	168	2.1	166	82	4	420	21	26	11	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395571--395753	41	4.4	41	72	16	126	19	27	10	42	1.84
395571--395738	86	2.0	86	81	6	200	20	27	11	40	1.87
396531--396581	19	2.6	20	78	6	59	37	17	13	31	1.89
399084--399123	13	3.1	13	88	0	62	42	12	15	30	1.83
401074--401288	117	1.8	117	96	0	403	26	24	14	33	1.94
405361--405434	20	3.7	20	94	3	123	36	18	13	31	1.90
405463--405517	19	2.8	20	84	13	78	36	16	14	32	1.89
405503--405529	13	2.1	13	100	0	54	40	14	14	29	1.86
405839--406203	44	8.5	43	75	9	246	20	25	13	40	1.89
405839--406123	129	2.2	131	84	2	360	21	25	12	39	1.89
405965--406214	82	3.0	80	75	12	222	19	25	13	42	1.88
406711--406762	20	2.6	20	93	0	86	26	15	13	44	1.84
409151--409430	79	3.5	79	81	1	301	26	25	15	32	1.95
411560--411759	52	3.9	50	76	10	199	39	17	20	23	1.92
411878--411955	29	2.8	28	82	3	102	24	17	29	28	1.98
412035--412132	30	3.2	30	82	5	108	36	13	23	26	1.92
412583--412625	14	3.2	13	90	9	68	30	6	30	32	1.84
414978--415021	21	2.1	21	86	0	61	34	9	15	40	1.79
415151--415206	20	2.7	20	86	5	76	33	14	8	42	1.77
417699--417800	28	3.6	28	74	10	116	27	30	14	27	1.95
417733--417819	30	3.0	29	66	17	81	31	29	8	31	1.86
417705--417819	58	2.0	57	98	1	221	29	29	10	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417763--417975	78	2.7	78	86	3	277	28	25	12	33	1.92
417626--417896	135	2.0	137	87	1	393	28	25	12	33	1.92
417871--418082	108	2.0	108	85	3	293	29	24	11	34	1.90
418010--418228	108	2.0	108	83	4	273	28	25	11	34	1.91
417763--418222	186	2.5	183	76	9	448	29	25	11	33	1.91
418175--418273	50	2.0	51	87	2	146	29	25	9	36	1.87
420354--420387	4	8.5	4	93	0	50	17	0	5	76	0.98
420361--420397	16	2.2	18	90	9	60	10	0	10	78	0.97
428237--428283	13	3.5	14	80	16	55	21	2	0	76	0.89
428238--428284	23	2.0	23	84	8	60	19	2	0	78	0.85

Tables:   1   2   3   4   5   6   7   8   9   10