genome.fa.s274.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold274
Parameters: 2 7 7 80 10 50 1000
Length:  1642345

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428825--430636	42	43.2	42	68	9	333	37	16	27	18	1.92
428844--430635	126	14.2	125	70	8	709	37	16	27	18	1.92
429618--430653	84	12.3	84	77	4	888	37	16	27	19	1.93
429679--430653	42	23.2	42	70	9	428	36	16	27	19	1.93
430881--431035	48	3.2	48	81	0	193	39	18	20	21	1.93
431690--431936	88	2.8	88	77	3	239	44	14	17	22	1.85
436421--436480	20	3.0	21	78	7	70	33	10	15	41	1.80
450435--450472	10	3.8	10	89	0	58	86	10	0	2	0.66
450436--450501	12	5.5	11	73	19	53	83	9	1	6	0.87
450434--450472	20	2.0	20	94	0	69	84	12	0	2	0.72
450436--450501	26	2.7	24	82	11	80	83	9	1	6	0.87
451714--452314	28	21.0	28	81	6	668	29	32	16	20	1.95
451714--452317	58	10.5	55	84	6	627	29	32	16	21	1.95
452423--452556	49	2.8	49	86	3	182	19	24	20	35	1.96
462727--462905	42	4.4	42	87	5	249	34	12	16	37	1.86
467413--467437	7	3.6	7	100	0	50	44	44	0	12	1.41
467954--468596	61	10.5	61	81	4	571	26	26	17	29	1.97
471385--471793	79	5.2	78	80	5	403	27	24	14	33	1.94
471352--471793	158	2.8	156	81	5	480	27	23	13	35	1.93
471729--471827	51	1.9	51	87	4	146	29	25	11	34	1.90
471731--471839	51	2.1	51	84	3	139	30	24	10	34	1.88
471886--472005	51	2.3	52	88	7	183	27	29	12	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479681--480055	166	2.3	163	84	5	466	30	13	10	45	1.77
479681--480226	167	3.3	166	80	7	506	31	12	9	46	1.74
480683--480742	18	3.6	17	76	17	63	78	1	20	0	0.84
480682--480741	9	6.4	9	76	16	52	78	1	20	0	0.84
480833--480880	20	2.2	23	85	10	66	31	4	22	41	1.73
485929--485989	13	4.5	13	72	27	56	78	3	11	6	1.05
485918--485973	29	2.0	27	86	6	76	82	3	8	5	0.94
486583--486916	112	3.0	111	80	5	370	32	14	14	38	1.87
487145--487543	88	4.5	88	83	1	451	24	19	14	42	1.88
487158--487482	44	7.4	44	71	13	193	23	19	14	43	1.87
487145--487601	176	2.6	175	82	2	540	24	19	14	41	1.89
488997--489205	46	4.8	45	69	18	131	22	19	13	43	1.87
488917--489264	126	2.8	123	81	7	369	23	19	12	43	1.86
489126--489229	46	2.3	45	83	9	124	22	21	14	42	1.88
489249--489650	44	9.4	45	68	14	172	21	22	15	41	1.89
488715--489519	334	2.4	333	79	6	835	21	21	13	42	1.88
489163--489385	81	2.7	81	84	6	279	24	24	13	38	1.90
489377--489527	79	1.9	79	83	2	196	18	22	16	42	1.89
489249--489562	124	2.5	124	83	3	371	20	23	15	41	1.90
489716--489897	86	2.1	85	80	8	192	20	23	9	46	1.79
490866--491374	166	3.1	164	82	5	587	30	11	9	48	1.72
502624--502812	79	2.4	79	82	0	243	33	14	25	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502786--502982	51	3.9	51	81	5	220	32	11	26	28	1.91
502784--503003	102	2.2	101	81	5	257	30	13	28	27	1.94
502843--503183	180	1.9	180	84	3	463	32	12	26	28	1.92
503023--503288	51	5.2	52	82	6	246	34	10	24	30	1.89
502894--503132	129	1.9	129	85	3	338	32	12	25	28	1.93
502758--503213	231	2.0	231	81	5	546	32	11	26	28	1.92
503074--503298	102	2.2	102	83	3	285	35	9	24	30	1.88
506436--506560	52	2.4	52	91	0	196	28	17	17	36	1.93
506444--506580	52	2.6	52	87	2	150	32	16	17	33	1.93
506566--506593	13	2.2	13	100	0	56	39	17	14	28	1.89
506639--506687	13	3.4	13	75	24	53	36	16	12	34	1.86
506639--506738	32	3.2	32	92	1	157	35	16	11	38	1.83
506644--506739	19	5.8	18	65	27	61	34	15	11	38	1.84
507185--507210	13	2.0	13	100	0	52	38	15	15	30	1.88
509428--509472	21	2.1	21	84	8	56	53	4	20	22	1.63
511274--511311	15	2.4	16	86	8	60	50	18	18	13	1.78
513320--513399	20	3.8	20	75	15	79	26	15	15	43	1.85
513385--513423	13	3.0	13	96	0	69	30	17	15	35	1.91
513544--513590	21	2.3	21	79	20	55	34	19	4	42	1.70
513546--513588	20	2.2	19	84	16	52	32	18	4	44	1.71
515853--515878	13	2.0	13	100	0	52	38	15	15	30	1.88
515933--515971	20	1.9	21	94	5	71	41	10	10	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518842--518882	21	2.0	21	85	9	57	39	12	9	39	1.76
518922--518992	20	3.5	20	78	14	76	42	16	12	28	1.85
519069--519099	10	3.1	10	90	0	53	22	29	6	41	1.78
519087--519142	21	2.6	22	94	5	105	26	25	10	37	1.88
519225--519250	13	2.0	13	100	0	52	30	15	23	30	1.95
519729--519795	37	1.9	35	88	11	102	32	11	25	29	1.92
520527--520551	13	1.9	13	100	0	50	44	16	8	32	1.76
520535--520643	20	5.8	20	80	14	124	44	17	14	23	1.86
520555--520625	33	2.2	33	89	5	108	42	18	15	23	1.88
520523--520643	53	2.3	53	91	2	190	43	16	14	24	1.86
520575--520605	13	2.4	13	94	0	53	38	19	16	25	1.92
521947--522145	58	3.4	58	80	4	179	26	10	15	48	1.76
522065--522174	49	2.3	48	79	7	125	22	13	16	47	1.82
522188--522534	58	6.0	57	75	10	283	25	12	15	46	1.81
522189--522562	116	3.2	116	75	7	362	25	12	14	46	1.80
527002--527043	16	2.6	16	88	0	57	38	16	9	35	1.81
526992--527142	48	3.1	48	78	3	153	40	13	11	34	1.81
527595--527682	35	2.5	35	92	3	142	54	4	11	29	1.56
528559--528599	21	2.0	21	90	9	66	39	9	9	41	1.71
528639--528708	20	3.5	20	74	12	65	37	15	15	31	1.89
528680--528810	53	2.5	53	96	0	235	36	18	16	28	1.93
528838--528868	10	3.1	10	90	0	53	22	29	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528856--528911	21	2.6	22	94	5	105	26	25	10	37	1.88
528968--529006	13	3.0	13	88	0	60	33	15	15	35	1.89
529476--529542	37	1.9	35	88	11	102	32	11	25	29	1.92
532616--532645	14	2.1	15	93	6	53	50	10	0	40	1.36
537254--537923	344	1.9	344	96	0	1241	33	14	14	37	1.87
539408--539701	117	2.5	115	82	5	331	48	14	9	27	1.75
539475--539679	58	3.5	58	73	12	168	49	15	9	26	1.74
540334--540391	12	5.1	11	80	12	64	1	18	0	79	0.82
540332--540389	15	3.8	16	78	13	59	1	20	0	77	0.86
541120--541169	21	2.4	21	80	6	57	48	14	8	30	1.72
545291--545337	20	2.3	21	81	3	60	38	17	14	29	1.89
548964--548999	16	2.2	16	90	0	54	41	5	8	44	1.58
554251--554309	29	2.0	29	100	0	118	23	18	27	30	1.98
555394--555483	20	4.4	20	73	16	69	36	8	3	51	1.50
555378--555483	39	2.7	41	81	10	123	34	9	2	52	1.48
555602--555650	16	3.1	15	77	8	53	26	10	14	48	1.75
555813--555850	16	2.4	16	82	4	51	42	2	0	55	1.14
557003--557045	17	2.5	17	88	7	61	32	2	4	60	1.30
557454--557492	20	1.9	21	94	5	71	35	23	15	25	1.94
557502--557526	13	1.9	13	100	0	50	32	16	16	36	1.90
557481--557545	33	2.0	32	88	8	96	27	15	15	41	1.87
557515--557583	19	3.6	19	94	0	120	23	17	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557632--557669	13	2.9	14	92	7	62	39	15	7	36	1.77
562310--562344	16	2.2	16	89	0	52	51	0	14	34	1.42
564649--564708	26	2.3	26	94	0	102	28	21	18	31	1.97
565529--565600	35	2.0	36	91	2	119	25	11	16	47	1.79
565673--565733	30	2.0	30	84	9	79	37	0	19	42	1.52
566466--566528	32	1.9	32	87	3	90	34	14	11	39	1.81
566504--566547	19	2.3	19	96	0	79	27	13	18	40	1.88
566625--566672	20	2.4	21	77	22	66	33	12	18	35	1.89
567809--567862	26	2.1	26	100	0	108	38	0	7	53	1.29
568201--568243	21	2.0	21	86	0	59	27	6	11	53	1.63

Tables:   1   2   3   4   5   6   7   8   9   10