genome.fa.s274.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold274
Parameters: 2 7 7 80 10 50 1000
Length:  1642345

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1530977--1531530	96	5.8	98	89	5	805	28	33	18	18	1.95
1531569--1531842	43	6.1	43	81	9	332	25	24	18	32	1.97
1531518--1531895	92	4.1	92	92	2	596	24	25	17	32	1.97
1531796--1531949	52	2.9	53	80	6	177	24	24	15	35	1.94
1531796--1532182	169	2.2	173	83	7	468	22	25	14	36	1.93
1532782--1532806	13	1.9	13	100	0	50	36	16	16	32	1.90
1532762--1532830	32	2.1	33	94	2	122	36	11	17	34	1.86
1532868--1532892	13	1.9	13	100	0	50	32	16	16	36	1.90
1532901--1533028	52	2.5	52	92	0	220	35	17	17	28	1.93
1536823--1539015	475	4.6	476	83	3	2706	36	14	18	30	1.90
1537078--1538789	159	10.8	158	66	12	467	36	14	18	30	1.91
1538910--1539131	116	1.9	116	86	0	318	36	18	17	27	1.93
1540125--1540419	159	1.9	158	79	7	337	36	11	18	32	1.88
1539669--1540564	454	2.0	448	85	2	1222	35	14	17	32	1.90
1540270--1541029	392	1.9	392	85	2	1053	37	13	17	31	1.89
1544872--1544915	19	2.1	21	88	12	65	47	6	9	36	1.62
1545123--1545199	33	2.3	33	86	0	109	35	14	19	31	1.92
1548695--1548733	19	2.0	20	90	10	62	48	7	7	35	1.61
1548941--1549010	13	4.8	13	71	21	50	34	15	14	35	1.88
1548967--1549030	20	3.6	19	72	27	68	35	17	14	32	1.89
1548956--1549031	33	2.3	33	97	0	143	35	17	13	34	1.88
1549020--1549117	43	2.3	43	90	0	160	35	20	11	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1549791--1550683	476	1.9	473	84	4	1190	37	13	17	31	1.88
1550606--1550764	81	2.0	81	89	0	246	39	8	18	33	1.81
1550687--1556010	476	11.2	476	81	3	5891	36	12	18	32	1.88
1550704--1555984	159	33.4	158	64	14	794	36	12	17	32	1.88
1550687--1556010	950	5.6	946	84	3	6113	36	12	18	32	1.88
1556023--1558103	476	4.4	477	86	2	2768	36	13	17	31	1.89
1556315--1557908	159	10.1	157	67	11	592	36	13	18	31	1.90
1559535--1560684	159	7.3	158	67	11	446	37	13	17	31	1.89
1559329--1562457	474	6.6	472	82	4	3419	35	13	18	32	1.90
1562057--1562678	318	2.0	316	87	1	913	35	13	18	32	1.90
1561723--1563304	792	2.0	790	80	5	1716	35	13	18	32	1.90
1562366--1566045	475	7.8	474	81	4	3989	35	13	18	32	1.90
1565673--1566304	316	2.0	318	84	2	831	34	14	19	31	1.92
1566002--1566990	474	2.1	472	81	4	1163	35	14	18	32	1.91
1571940--1572058	42	2.8	42	92	0	193	8	46	2	42	1.47
1571973--1572048	12	6.9	11	75	15	52	9	48	2	39	1.49
1571964--1572049	24	3.8	24	72	17	85	10	45	2	41	1.51
1571955--1572025	18	3.6	18	69	20	52	9	43	2	43	1.52
1573681--1612816	949	41.3	947	74	8	12590	35	13	18	32	1.90
1573674--1612816	474	82.7	475	77	8	13738	35	13	18	32	1.90
1583269--1583938	158	4.2	159	67	15	424	36	13	16	33	1.88
1583399--1584046	158	4.1	159	65	14	370	36	13	16	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1589231--1612816	475	49.9	472	77	8	9495	35	13	18	32	1.90
1597092--1600815	473	7.9	474	83	4	4041	36	13	18	32	1.89
1598877--1599543	158	4.2	156	67	16	426	36	13	16	33	1.88
1607541--1612668	158	32.5	158	64	12	743	36	13	18	32	1.90
1613440--1616924	475	7.4	473	82	4	3822	35	13	17	32	1.90
1618466--1618491	13	2.0	13	100	0	52	38	15	15	30	1.88
1618448--1618511	32	2.0	33	90	3	103	42	15	14	28	1.86
1619263--1625550	475	13.3	471	81	4	6467	35	13	18	31	1.90
1626420--1626454	16	2.2	16	89	0	52	57	2	25	14	1.51
1626427--1626460	16	2.1	16	94	0	59	44	5	29	20	1.75
1629781--1629829	13	4.2	13	71	28	56	28	12	18	40	1.86
1635167--1635285	42	2.8	42	92	0	193	8	46	2	42	1.47
1635200--1635275	12	6.9	11	75	15	52	9	48	2	39	1.49
1635191--1635276	24	3.8	24	72	17	85	10	45	2	41	1.51
1635182--1635252	18	3.6	18	69	20	52	9	43	2	43	1.52

Tables:   1   2   3   4   5   6   7   8   9   10

The End!