genome.fa.s274.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold274
Parameters: 2 7 7 80 10 50 1000
Length:  1642345

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906491--906537	21	2.3	21	85	3	60	23	2	2	72	1.06
916037--916075	21	1.9	20	94	5	69	41	12	10	35	1.77
918081--918107	13	2.1	13	100	0	54	51	14	0	33	1.43
919504--919556	20	2.7	20	93	0	88	9	16	41	32	1.81
919987--920023	13	2.8	13	95	0	65	32	16	18	32	1.93
932103--932239	51	2.7	50	84	3	175	45	9	16	28	1.78
932202--932278	20	3.8	20	82	0	91	48	11	9	31	1.71
933210--933272	32	1.9	33	93	3	110	22	19	30	28	1.98
934010--934074	33	2.0	33	88	11	98	30	15	15	38	1.88
934030--934054	13	1.9	13	100	0	50	32	16	16	36	1.90
934102--934176	20	3.8	19	85	3	78	36	16	14	33	1.89
934125--934217	40	2.4	39	82	10	118	40	16	15	27	1.88
934185--934232	20	2.4	20	100	0	96	37	18	12	31	1.88
935080--935146	33	2.0	33	91	0	107	29	19	26	23	1.98
936714--936739	13	2.0	13	100	0	52	30	15	15	38	1.88
936694--936757	32	2.0	33	87	9	96	29	14	14	42	1.84
938801--938843	20	2.1	20	82	4	50	9	27	44	18	1.80
939272--939309	13	2.9	13	92	0	58	31	13	18	36	1.89
946535--946574	13	3.1	13	77	0	53	40	17	12	30	1.86
951502--951622	19	6.9	18	71	28	102	33	18	12	35	1.88
951493--951600	32	3.4	32	97	0	198	33	18	13	34	1.90
951525--951581	13	3.9	13	76	24	60	33	17	14	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953063--953117	19	2.8	20	86	8	78	36	14	14	34	1.87
953084--953212	33	3.9	33	90	3	199	43	13	14	28	1.83
953135--953195	13	5.2	13	73	18	62	44	13	14	27	1.83
953115--953212	20	5.6	19	68	30	76	44	13	14	27	1.82
953768--953815	20	2.3	22	92	7	82	43	16	4	35	1.67
953768--953824	20	2.6	21	86	13	80	40	15	3	40	1.65
953770--953815	21	2.3	19	88	11	65	43	17	4	34	1.69
954418--954461	20	2.1	22	83	8	56	13	25	38	22	1.91
954735--954787	21	2.6	20	80	13	63	49	0	18	32	1.48
954872--954897	13	2.0	13	100	0	52	38	15	15	30	1.88
958454--958509	19	2.8	20	83	2	69	37	17	12	32	1.88
958494--958520	13	2.1	13	100	0	54	40	14	14	29	1.86
958478--958539	33	1.9	32	87	9	90	41	16	14	27	1.87
963296--963792	28	17.5	28	83	5	520	24	16	28	29	1.97
963801--963888	14	6.6	14	69	10	67	37	18	10	34	1.84
963802--963873	26	2.8	26	75	8	74	38	16	11	33	1.84
964036--964104	26	2.7	26	83	0	75	28	10	24	36	1.88
971400--971808	79	5.2	78	80	6	441	33	14	24	26	1.95
971400--971808	159	2.6	156	82	6	461	33	14	24	26	1.95
971746--971924	51	3.5	51	84	2	218	34	11	25	28	1.91
973914--973972	32	1.9	30	83	13	75	59	10	10	20	1.58
974270--974295	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974251--974313	32	2.0	32	87	6	92	28	14	17	39	1.89
980787--980831	21	2.1	21	84	8	56	22	20	4	53	1.63
982722--982780	32	1.9	30	83	13	75	59	10	10	20	1.58
983041--983103	32	2.0	32	84	6	83	30	14	15	39	1.87
984207--984280	20	3.7	19	85	7	94	41	14	16	27	1.87
984307--984363	20	2.8	20	89	0	87	45	17	14	22	1.84
984298--984325	13	2.2	13	100	0	56	35	14	17	32	1.90
984652--984899	124	2.0	124	99	0	487	27	20	19	31	1.97
986525--986549	13	1.9	13	100	0	50	32	16	16	36	1.90
987542--987711	79	2.2	79	83	2	207	32	14	22	30	1.93
987667--987738	28	2.6	27	91	4	108	31	16	26	25	1.96
987695--987900	78	2.6	78	92	1	340	31	16	27	25	1.96
987887--988059	51	3.4	49	84	6	204	34	13	23	28	1.93
990356--990385	13	2.3	13	100	0	60	40	13	16	30	1.87
990369--990442	20	3.7	19	89	7	103	41	13	16	28	1.86
991285--991887	55	10.4	57	85	8	655	26	20	27	26	1.99
991658--991744	28	3.1	28	65	15	72	28	20	24	26	1.99
991285--991887	232	2.6	229	87	6	807	26	20	27	26	1.99
992860--992917	1	58.0	1	75	0	53	1	1	8	87	0.67
992861--992915	9	5.9	9	83	12	67	1	1	9	87	0.70
992858--992918	21	3.1	20	83	9	81	4	1	8	85	0.80
992860--992917	18	3.2	17	86	11	80	1	1	8	87	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998738--998802	19	3.8	18	71	24	68	33	12	15	38	1.85
998740--998807	32	2.1	32	94	0	118	35	11	16	36	1.85
998845--998869	13	1.9	13	100	0	50	32	16	16	36	1.90
998878--999006	52	2.5	52	89	0	177	34	18	17	29	1.94
1012843--1012909	22	3.0	22	80	12	57	83	13	0	2	0.76
1012835--1012908	36	2.0	37	82	12	91	82	13	1	2	0.84
1012860--1012903	14	3.1	14	93	6	72	86	13	0	0	0.57
1012865--1012909	14	3.2	14	93	6	74	86	13	0	0	0.57
1014340--1014441	29	3.6	28	85	6	125	34	31	15	18	1.93
1014370--1014451	28	2.9	28	83	12	96	34	29	18	18	1.94
1014455--1014642	43	3.9	49	81	11	217	23	25	17	34	1.96
1014530--1014597	21	3.2	21	67	19	59	26	25	17	30	1.97
1014552--1014652	52	1.9	53	85	2	141	24	23	14	36	1.93
1015298--1015322	13	1.9	13	100	0	50	36	16	16	32	1.90
1015278--1015346	32	2.1	33	91	2	113	36	11	15	36	1.84
1015384--1015408	13	1.9	13	100	0	50	32	16	16	36	1.90
1015417--1015545	52	2.5	52	97	0	240	35	18	17	27	1.94
1021031--1021109	20	4.0	19	83	8	104	41	12	17	27	1.86
1021032--1021108	40	1.9	40	94	0	136	40	12	18	28	1.87
1021500--1021568	33	2.1	33	89	5	104	37	14	15	31	1.88
1030201--1030225	13	1.9	13	100	0	50	32	16	16	36	1.90
1030295--1030363	33	2.1	33	89	5	104	37	14	15	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036289--1036336	15	3.2	15	72	0	51	16	0	41	41	1.48
1044152--1044295	51	2.8	51	84	0	189	43	10	17	29	1.82
1049668--1049717	21	2.3	21	80	10	57	56	4	18	22	1.58
1051515--1051545	15	2.1	15	93	0	53	48	16	22	12	1.80
1053626--1053663	13	2.9	14	88	11	62	36	15	15	31	1.90
1053775--1053820	21	2.2	20	81	11	58	32	19	4	43	1.71
1056197--1056222	13	2.0	13	100	0	52	38	15	15	30	1.88
1056179--1056243	34	2.0	32	90	6	103	44	15	10	29	1.80
1057909--1057999	33	2.8	33	88	1	130	30	16	15	37	1.90
1057956--1057980	13	1.9	13	100	0	50	36	16	16	32	1.90
1057969--1058021	20	2.7	20	85	2	72	32	18	13	35	1.90
1058527--1058575	23	2.0	25	85	14	68	34	6	20	38	1.77
1060292--1060595	142	2.2	139	84	6	416	46	9	9	34	1.69
1060329--1060662	139	2.4	142	81	7	360	45	11	9	33	1.73
1061968--1062187	113	1.9	113	83	5	284	35	12	24	28	1.91
1062071--1062248	61	2.9	61	80	1	205	37	12	25	24	1.91
1062310--1062335	13	2.0	13	100	0	52	23	23	15	38	1.92
1062580--1062732	32	4.7	33	77	11	163	21	18	30	30	1.97
1064067--1064106	17	2.4	17	86	0	53	2	5	7	85	0.83
1064075--1064113	17	2.3	17	90	0	60	2	0	10	87	0.65
1064084--1064125	17	2.3	18	84	8	50	9	0	9	80	0.89
1064094--1064146	22	2.4	21	78	6	61	13	0	7	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064074--1064161	18	4.7	17	73	21	54	7	2	10	79	1.01
1079827--1080132	142	2.2	143	87	1	456	44	11	9	34	1.73
1079827--1080199	142	2.6	139	83	3	453	43	12	10	34	1.76
1081878--1081992	50	2.3	51	82	5	144	33	13	24	29	1.93
1081928--1082492	79	7.2	77	75	8	408	37	13	21	27	1.91
1081928--1082477	157	3.5	156	77	9	492	37	13	21	27	1.91
1081949--1082492	160	3.4	156	76	9	505	37	13	21	27	1.91
1082438--1082548	55	2.0	55	87	6	163	38	10	22	27	1.88
1084954--1085068	50	2.3	51	87	1	169	42	13	16	26	1.86
1085493--1085519	12	2.2	12	100	0	54	66	11	22	0	1.22

Tables:   1   2   3   4   5   6   7   8   9   10