genome.fa.s274.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold274
Parameters: 2 7 7 80 10 50 1000
Length:  1642345

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1139 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568230--568387	21	7.4	21	70	11	79	37	5	5	51	1.48
582282--582410	45	2.9	44	81	4	159	55	20	0	24	1.49
584243--584267	13	1.9	13	100	0	50	32	16	16	36	1.90
584317--584369	19	2.7	20	88	2	72	35	16	15	32	1.90
584339--584402	32	2.0	32	87	3	92	39	12	18	29	1.88
584956--585012	22	2.6	22	91	0	87	29	12	3	54	1.54
586686--586728	21	2.0	22	86	4	61	51	0	20	27	1.48
586838--586862	13	1.9	13	100	0	50	36	16	16	32	1.90
590812--590910	34	3.0	34	94	2	175	27	11	15	46	1.79
590812--590910	13	5.6	19	68	31	78	27	11	15	46	1.79
592965--593007	20	2.1	20	86	4	59	9	30	44	16	1.79
593439--593476	13	2.9	13	96	0	67	31	15	18	34	1.92
595556--595586	15	2.1	15	93	0	53	12	22	16	48	1.80
602952--603016	33	2.0	33	85	11	89	32	16	15	35	1.91
605278--605317	20	2.0	20	100	0	80	30	15	20	35	1.93
605333--605389	19	2.9	19	86	2	78	31	15	15	36	1.90
605419--605483	33	2.0	33	87	0	94	36	15	15	32	1.89
607627--607827	79	2.6	78	84	2	242	29	16	28	24	1.97
607623--607824	78	2.6	78	84	2	244	29	16	29	24	1.97
607779--607850	28	2.6	28	86	0	90	25	19	33	22	1.97
607838--608228	52	7.5	52	70	14	239	32	12	25	29	1.93
607930--608059	51	2.5	52	82	1	163	34	14	23	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608042--608117	27	2.8	26	88	9	100	21	22	34	22	1.97
607728--608228	263	1.9	262	88	2	763	31	13	26	27	1.94
610586--610611	13	2.0	13	100	0	52	38	15	15	30	1.88
610565--610631	33	2.0	33	88	0	98	43	16	14	25	1.86
610651--610750	19	5.9	18	73	26	103	38	15	12	35	1.84
610673--610729	13	3.9	13	76	24	60	35	15	14	35	1.88
610654--610748	32	3.0	32	98	0	181	36	15	12	34	1.86
610806--610862	21	2.7	21	97	0	105	36	19	10	33	1.86
610871--610906	10	3.8	10	85	14	58	16	0	0	83	0.65
611612--612240	55	11.0	56	81	9	639	25	20	27	26	1.99
611684--611772	29	3.2	28	66	30	73	22	17	30	29	1.97
611611--612233	171	3.6	172	89	4	846	25	20	27	26	1.99
611612--612240	116	5.5	111	82	7	624	25	20	27	26	1.99
613249--613295	14	3.5	13	83	11	51	0	4	10	85	0.74
613231--613294	26	2.5	26	80	14	62	0	9	9	81	0.88
613258--613296	12	3.2	12	82	10	53	0	2	10	87	0.65
613248--613285	19	2.0	20	90	10	62	0	5	7	86	0.69
613248--613297	10	5.0	10	80	7	57	0	4	12	84	0.76
613248--613296	13	3.6	13	81	15	55	0	4	10	85	0.71
625658--625858	79	2.6	78	83	2	233	29	16	28	24	1.97
625810--625881	28	2.6	28	86	0	90	25	19	33	22	1.97
626073--626148	27	2.8	26	88	9	100	21	22	34	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625759--626259	263	1.9	262	90	2	790	31	13	26	27	1.94
625869--626254	52	7.4	52	71	11	250	31	13	25	29	1.93
627879--627951	20	3.6	20	81	3	101	35	13	19	31	1.91
627879--627973	41	2.3	42	96	1	174	40	12	17	29	1.87
628012--628037	13	2.0	13	100	0	52	38	15	15	30	1.88
632099--632129	15	2.1	15	93	0	53	48	16	22	12	1.80
634143--634221	20	3.7	21	75	15	72	26	13	15	44	1.84
634208--634246	13	3.0	13	96	0	69	30	17	15	35	1.91
636052--636097	16	2.8	16	93	6	74	28	2	39	30	1.69
636682--636754	20	3.6	20	81	3	101	35	13	19	31	1.91
636682--636776	41	2.3	42	96	1	174	40	12	17	29	1.87
636815--636840	13	2.0	13	100	0	52	38	15	15	30	1.88
638598--638623	13	2.0	13	100	0	52	38	15	15	30	1.88
638577--638643	33	2.0	33	88	0	98	43	16	14	25	1.86
638663--638730	19	3.9	18	75	23	74	39	14	10	35	1.80
638685--638709	13	1.9	13	100	0	50	32	16	16	36	1.90
638666--638728	32	2.0	32	93	0	108	38	15	11	34	1.83
638786--638842	21	2.7	21	97	0	105	36	19	10	33	1.86
643958--643997	20	2.0	21	90	5	64	40	10	17	32	1.83
644026--644062	13	2.8	13	95	0	65	32	13	16	37	1.87
646542--646617	19	3.8	19	87	5	89	32	11	14	40	1.82
646542--646617	39	1.9	39	86	7	109	32	11	14	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646545--646618	20	3.7	20	83	8	80	35	12	13	39	1.82
653893--654005	35	3.3	35	78	9	101	31	13	23	31	1.93
656465--656489	13	1.9	13	100	0	50	36	16	16	32	1.90
657141--657210	22	3.2	21	69	15	52	37	21	1	40	1.62
657278--657357	42	1.9	42	89	5	126	26	22	5	46	1.72
658519--658574	22	2.5	22	88	0	85	33	12	12	41	1.81
664820--664856	3	12.3	3	94	0	65	29	32	0	37	1.58
667757--667817	32	1.9	32	100	0	122	32	13	13	40	1.82
672483--672514	3	10.7	3	93	0	55	31	0	37	31	1.58
675283--675328	22	2.1	22	84	8	67	30	45	13	10	1.77
676626--676700	23	3.5	23	74	20	90	50	0	28	21	1.49
676621--676701	40	2.0	40	97	0	153	48	0	25	25	1.52
677394--677458	33	2.0	33	84	0	85	32	15	16	35	1.91
678309--678375	37	1.9	35	88	11	102	29	25	11	32	1.92
678734--678800	33	2.0	33	88	0	98	34	11	13	40	1.81
678754--678778	13	1.9	13	100	0	50	36	16	16	32	1.90
678840--678864	13	1.9	13	100	0	50	32	16	16	36	1.90
678873--679002	52	2.5	52	90	3	192	32	19	16	32	1.94
682521--682609	34	2.8	31	78	11	99	35	10	24	29	1.88
682577--682631	21	2.5	22	88	5	85	36	10	25	27	1.89
682619--682649	10	3.1	10	90	0	53	41	6	29	22	1.78
682673--682809	53	2.6	53	95	1	247	27	17	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682779--682849	20	3.5	20	77	11	74	29	12	16	40	1.86
682889--682929	21	2.0	21	85	9	57	39	9	12	39	1.76
683833--683920	35	2.6	35	84	13	123	31	11	22	34	1.90
685925--685965	11	3.5	12	83	12	50	80	0	19	0	0.71
689660--689710	20	2.5	20	90	0	75	33	15	15	35	1.90
689681--689732	21	2.5	20	84	6	68	32	15	11	40	1.83
689764--689824	20	3.0	20	83	4	77	37	9	14	37	1.80
691281--691870	162	3.6	162	82	5	719	34	11	14	39	1.82
693910--693936	13	2.1	13	100	0	54	37	18	14	29	1.91
694614--694670	27	2.1	27	87	6	80	31	29	5	33	1.80
701155--701180	13	2.0	13	100	0	52	30	15	15	38	1.88
703720--703758	13	3.0	13	92	0	60	38	15	17	28	1.91
705838--705868	15	2.1	15	93	0	53	12	22	16	48	1.80
709915--709966	19	2.7	20	87	6	79	28	13	15	42	1.85
712288--712313	13	2.0	13	100	0	52	30	15	15	38	1.88
713011--713054	21	2.1	21	83	8	54	25	31	4	38	1.76
714859--714884	13	2.0	13	100	0	52	38	15	15	30	1.88
716963--716993	15	2.1	15	93	0	53	12	22	16	48	1.80
718797--718841	21	2.1	21	84	8	56	22	20	4	53	1.63
727293--727325	17	1.9	17	93	0	57	90	3	6	0	0.52
735715--735839	52	2.4	52	93	0	214	28	17	17	36	1.93
735715--735857	52	2.7	51	87	4	198	30	16	18	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735936--735960	13	1.9	13	100	0	50	32	16	16	36	1.90
736846--737412	49	11.9	49	81	9	615	32	17	24	25	1.96
736899--737412	92	5.5	92	86	8	653	32	17	24	25	1.97
736956--737412	141	3.3	141	94	1	755	31	18	25	25	1.98
737405--737722	33	9.7	33	92	4	522	20	18	33	27	1.96
737813--737968	31	5.1	31	83	5	183	32	15	28	24	1.95
738068--738105	16	2.3	17	86	4	51	26	5	23	44	1.74
738907--738949	21	2.1	20	82	4	50	0	18	2	79	0.85
738915--738974	21	2.8	21	79	16	70	0	11	5	83	0.80
738914--738974	25	2.5	24	84	12	72	0	13	4	81	0.83

Tables:   1   2   3   4   5   6   7   8   9   10