genome.fa.s28.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold28
Parameters: 2 7 7 80 10 50 1000
Length:  2815568

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  10  of  16  ( 1890 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1573283--1573348	24	2.8	23	78	13	80	42	3	0	54	1.15
1573687--1573711	4	6.2	4	100	0	50	76	0	0	24	0.80
1573852--1573911	22	2.7	22	77	15	61	50	3	0	46	1.18
1575933--1575976	8	6.0	8	82	15	51	54	0	0	45	0.99
1575960--1576042	23	3.7	21	70	17	60	51	1	2	44	1.22
1576172--1576222	22	2.3	22	75	18	52	50	3	0	45	1.20
1576421--1576522	32	3.1	32	70	24	79	46	0	3	49	1.27
1576444--1576488	15	2.8	17	83	13	67	48	0	2	48	1.13
1576438--1576536	32	3.1	31	79	17	96	48	0	2	49	1.12
1576442--1576535	17	5.8	16	69	14	50	50	0	2	47	1.13
1576983--1577035	27	2.0	26	81	3	61	58	3	1	35	1.27
1577294--1577320	2	13.5	2	100	0	54	0	51	0	48	1.00
1577873--1577900	4	7.0	4	100	0	56	0	25	0	75	0.81
1586854--1586893	18	2.2	18	86	8	55	25	0	0	75	0.81
1586856--1586898	23	2.0	21	86	9	59	25	0	0	74	0.82
1587139--1587175	19	1.9	19	88	0	56	21	5	8	64	1.40
1602521--1602562	14	3.0	14	92	0	75	33	30	7	28	1.84
1603049--1603127	28	2.7	28	85	14	99	29	25	16	29	1.97
1603003--1603127	30	4.2	30	76	14	125	29	24	16	29	1.96
1603191--1603629	52	8.4	52	78	7	335	24	21	16	37	1.94
1603296--1603629	156	2.1	156	79	7	374	24	21	17	37	1.94
1603191--1603622	104	4.2	104	79	3	462	24	21	16	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1607840--1607930	32	2.7	33	77	15	96	35	21	13	29	1.92
1611626--1611669	21	2.1	21	82	0	52	20	15	0	63	1.31
1614525--1614570	14	3.4	14	76	11	60	43	0	0	56	0.99
1614525--1614578	14	4.0	14	76	9	58	44	0	0	55	0.99
1614526--1614580	26	2.1	26	100	0	110	45	0	0	54	0.99
1615269--1615302	17	2.0	17	94	0	59	61	0	0	38	0.96
1615501--1615530	14	2.1	15	93	6	53	50	10	0	40	1.36
1616150--1616349	61	3.3	59	76	3	193	42	14	11	32	1.80
1616419--1616469	25	2.0	25	88	7	77	49	7	13	29	1.70
1616519--1616644	68	1.9	67	83	8	166	42	9	7	39	1.67
1617801--1617889	16	5.6	16	77	10	74	49	29	8	12	1.71
1618734--1618807	20	3.7	20	85	7	105	40	12	16	31	1.85
1618737--1618901	40	3.8	40	70	16	141	41	12	15	30	1.83
1618705--1618912	91	2.3	91	93	0	353	42	11	16	29	1.83
1618838--1618901	20	3.2	19	78	8	65	42	12	14	31	1.82
1620624--1620767	62	2.3	61	86	2	207	25	26	18	29	1.98
1620786--1621462	116	5.8	118	81	8	719	27	25	19	27	1.99
1620793--1621468	61	11.5	59	78	12	587	27	25	19	28	1.98
1622060--1622166	29	3.6	29	80	9	133	28	15	14	41	1.87
1622106--1622135	13	2.3	13	94	0	51	33	16	10	40	1.82
1622057--1622184	62	2.1	62	92	0	211	29	16	14	39	1.87
1624483--1624603	51	2.4	51	77	1	134	33	23	9	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1624614--1624687	28	2.7	27	87	8	105	25	32	17	24	1.97
1624567--1624843	108	2.6	108	80	1	322	28	26	12	31	1.93
1624783--1624896	51	2.2	50	89	4	174	31	28	8	31	1.87
1624831--1625055	79	2.8	78	79	5	256	28	28	12	29	1.93
1627205--1627271	20	3.7	20	70	25	76	26	14	14	43	1.85
1627205--1627278	33	2.2	33	95	0	130	27	14	16	41	1.87
1627693--1627765	20	3.6	20	81	3	101	36	13	17	31	1.89
1627710--1627786	21	3.7	21	77	6	86	42	11	16	28	1.84
1627693--1627786	41	2.3	41	94	3	163	39	12	18	29	1.88
1627825--1627850	13	2.0	13	100	0	52	38	15	15	30	1.88
1631280--1631333	20	2.7	20	91	2	81	35	11	20	33	1.88
1631297--1631350	20	2.7	20	88	0	72	35	11	18	35	1.86
1633309--1633378	27	2.6	27	90	2	106	22	18	34	24	1.96
1633393--1633615	52	4.3	51	79	3	221	33	11	25	30	1.91
1633598--1633669	26	2.7	26	84	4	90	23	22	31	22	1.98
1633656--1633787	51	2.5	52	80	9	151	31	11	24	32	1.90
1634966--1635089	63	2.0	64	88	4	189	25	26	20	28	1.99
1635136--1635573	120	3.7	118	77	10	380	27	24	19	28	1.98
1635156--1635506	185	1.9	182	81	11	419	27	23	18	30	1.98
1635155--1635816	124	5.5	119	74	15	440	27	24	19	28	1.99
1635463--1635755	57	5.0	56	75	16	211	28	25	20	25	1.99
1635570--1635805	61	3.8	62	79	9	214	26	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1639058--1639130	28	2.7	27	83	12	96	26	31	16	26	1.96
1639058--1639128	27	2.6	26	86	10	90	26	30	15	26	1.96
1641682--1641752	30	2.2	33	83	11	87	25	15	16	42	1.88
1642164--1642235	20	3.6	20	79	5	92	36	13	18	31	1.90
1642164--1642240	40	2.0	40	97	2	147	40	12	16	29	1.86
1645737--1645788	20	2.6	21	84	9	72	34	11	21	32	1.89
1645752--1645789	20	1.9	20	100	0	76	36	10	21	31	1.87
1645753--1645806	20	2.7	20	88	0	72	35	11	18	35	1.86
1646590--1646677	16	5.6	16	80	8	81	48	29	9	12	1.71
1647520--1647593	20	3.7	20	85	7	105	40	12	16	31	1.85
1647523--1647688	40	3.8	40	70	16	134	41	12	15	31	1.83
1647491--1647699	91	2.3	91	92	0	346	42	11	16	30	1.83
1647624--1647688	20	3.2	19	76	10	58	41	12	13	32	1.82
1649407--1649550	62	2.3	61	88	2	216	25	27	18	29	1.98
1649569--1650245	116	5.8	118	81	8	719	27	25	19	27	1.99
1649576--1650251	61	11.5	59	78	12	587	27	25	19	28	1.98
1650843--1650949	29	3.6	29	80	9	133	28	15	14	41	1.87
1650889--1650918	13	2.3	13	94	0	51	33	16	10	40	1.82
1650840--1650967	62	2.1	62	92	0	211	29	16	14	39	1.87
1653397--1653470	28	2.7	27	87	8	105	25	32	17	24	1.97
1653375--1653626	108	2.3	108	81	2	317	28	26	13	31	1.94
1653566--1653679	51	2.2	50	89	4	174	31	28	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1653614--1653838	79	2.8	78	79	5	256	28	28	12	29	1.93
1655988--1656054	20	3.7	20	70	25	76	26	14	14	43	1.85
1655988--1656061	33	2.2	33	95	0	130	27	14	16	41	1.87
1656476--1656548	20	3.6	20	81	3	101	36	13	17	31	1.89
1656493--1656569	21	3.7	21	77	6	86	42	11	16	28	1.84
1656476--1656569	41	2.3	41	94	3	163	39	12	18	29	1.88
1656608--1656633	13	2.0	13	100	0	52	38	15	15	30	1.88
1660069--1660122	20	2.7	20	91	2	81	35	11	20	33	1.88
1662097--1662199	28	3.8	27	82	7	111	26	18	32	23	1.97
1662097--1662168	27	2.6	28	91	2	110	23	19	33	23	1.97
1662183--1662569	52	7.4	51	72	8	231	32	12	24	30	1.92
1662387--1662461	27	2.8	26	86	12	98	24	22	32	21	1.98
1662446--1662577	51	2.5	52	80	9	151	31	11	24	32	1.90
1664946--1664971	13	2.0	13	100	0	52	38	15	15	30	1.88
1664925--1664991	33	2.0	33	88	0	98	43	16	14	25	1.86
1665014--1665076	32	2.0	32	83	0	81	38	12	11	38	1.79
1665872--1666064	55	3.4	54	84	12	246	25	21	26	26	1.99
1679548--1679613	28	2.4	28	89	0	96	24	24	28	22	1.99
1679563--1679644	28	3.0	27	83	5	92	25	19	31	23	1.98
1679627--1679901	52	5.3	52	86	3	322	32	12	25	29	1.92
1679627--1679901	105	2.6	104	83	3	356	32	12	25	29	1.92
1679884--1679959	27	2.8	28	89	2	109	21	21	34	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1679572--1680062	161	3.1	158	72	13	468	31	13	26	28	1.94
1680852--1680877	13	2.0	13	100	0	52	30	15	15	38	1.88
1680916--1680968	20	2.6	21	87	3	72	32	18	13	35	1.90
1681575--1681618	21	2.1	21	83	8	54	25	31	4	38	1.76
1683419--1683457	13	3.0	13	100	0	78	38	15	15	30	1.88
1685536--1685566	15	2.1	15	93	0	53	12	22	16	48	1.80
1687369--1687413	21	2.1	21	84	8	56	22	20	4	53	1.63
1689642--1689667	13	2.0	13	100	0	52	30	15	15	38	1.88
1692388--1692442	20	2.8	20	82	0	74	45	16	14	23	1.84
1692462--1692529	19	3.9	18	76	23	83	39	14	10	35	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16