genome.fa.s286.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Length:  1428881

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 1075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458712--458779	33	2.1	33	91	2	111	35	16	14	33	1.89
464645--464676	8	4.0	8	91	0	55	15	0	21	62	1.32
464880--464918	13	3.0	13	96	0	69	30	17	15	35	1.91
468363--468627	139	1.9	139	93	1	460	33	12	24	28	1.92
468499--468850	79	4.5	79	91	0	569	32	14	26	27	1.94
470062--470230	35	4.9	35	86	2	243	17	29	5	47	1.69
470062--470230	69	2.4	69	91	1	259	17	29	5	47	1.69
470842--470945	42	2.5	41	81	10	122	44	11	27	16	1.82
470995--471088	36	2.6	36	87	0	134	39	17	18	25	1.91
471112--471306	61	3.3	61	81	9	228	27	20	25	26	1.99
471406--471495	30	3.2	30	65	20	84	26	18	28	25	1.98
471170--471466	155	1.9	154	85	8	417	26	19	29	23	1.98
471325--472673	61	22.5	61	92	3	2190	25	19	29	25	1.99
471802--471888	25	3.3	24	67	21	66	25	19	28	26	1.99
471822--471905	25	3.1	27	65	21	75	25	20	29	25	1.99
471827--471916	30	3.2	30	65	20	84	26	18	28	25	1.98
478728--478863	51	2.6	50	78	6	139	35	13	23	27	1.92
478796--479019	78	2.9	78	89	2	351	32	13	25	28	1.94
478952--479121	51	3.3	51	91	0	277	33	12	24	29	1.92
479053--479244	79	2.4	79	92	0	321	31	14	26	27	1.95
478874--479200	181	1.8	179	91	1	546	33	12	25	29	1.93
480456--480623	35	4.9	35	85	3	243	18	29	5	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480458--480623	68	2.4	69	90	3	255	18	28	5	47	1.71
480974--480998	13	1.9	13	100	0	50	32	16	16	36	1.90
480954--481021	33	2.1	32	86	2	91	36	17	14	30	1.90
481767--482119	157	2.2	156	84	4	458	27	7	16	47	1.74
496343--496397	19	2.9	19	94	0	92	34	9	14	41	1.77
498826--498950	51	2.4	49	81	9	142	32	25	10	31	1.89
498940--499008	27	2.5	28	88	6	97	24	33	17	24	1.96
498824--499213	52	7.5	51	69	14	183	28	25	12	33	1.92
498824--499322	262	1.9	261	83	7	645	27	25	13	33	1.94
506086--506209	51	2.4	52	85	5	171	32	25	11	31	1.91
506193--506265	27	2.6	28	87	6	96	26	30	20	23	1.99
506251--506417	52	3.2	52	83	5	162	27	23	13	35	1.92
506298--506473	52	3.4	52	77	3	183	30	25	13	31	1.93
506461--506527	28	2.4	28	92	0	107	23	28	19	28	1.98
506084--506583	264	1.9	261	85	4	693	27	26	13	32	1.94
518791--518857	33	2.0	33	88	0	98	34	11	13	40	1.81
518811--518835	13	1.9	13	100	0	50	36	16	16	32	1.90
518901--518925	13	1.9	13	100	0	50	32	16	16	36	1.90
518934--519054	52	2.3	52	97	0	224	34	18	18	28	1.94
522995--523022	1	28.0	1	100	0	56	0	0	0	100	0.00
525962--526015	17	3.5	15	83	14	65	87	12	0	0	0.56
525977--526014	19	2.0	20	94	5	69	86	13	0	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525963--526015	11	4.7	11	86	11	72	86	13	0	0	0.56
526251--526303	15	3.3	16	86	7	81	84	7	7	0	0.76
526253--526309	23	2.4	24	82	5	71	84	7	8	0	0.79
526253--526310	15	3.7	15	84	13	73	84	6	8	0	0.78
526364--526388	9	2.8	9	100	0	50	92	8	0	0	0.40
527332--527481	31	4.9	30	80	9	151	24	28	17	30	1.97
527332--527508	32	5.7	32	82	11	163	24	29	16	28	1.97
527329--527452	62	2.0	63	90	4	198	23	26	17	32	1.97
527332--527717	93	3.9	96	81	7	296	22	31	14	32	1.93
527430--528185	34	22.7	32	83	9	724	18	33	12	34	1.89
527461--528116	161	4.0	160	87	8	863	18	34	12	33	1.89
527928--528015	33	3.0	27	77	17	95	18	35	15	30	1.92
528187--528324	67	2.1	66	91	4	224	28	36	16	18	1.93
528189--528319	33	4.0	33	92	5	212	29	34	17	18	1.94
528326--528709	49	7.7	49	84	3	484	24	26	17	31	1.97
528326--528781	97	4.5	100	89	6	629	25	25	16	32	1.96
528326--528773	146	3.0	148	81	5	531	25	25	16	32	1.97
528723--528849	67	1.9	68	86	1	184	24	25	11	38	1.89
529640--529706	33	2.0	33	88	0	98	34	11	13	40	1.81
529660--529684	13	1.9	13	100	0	50	36	16	16	32	1.90
529750--529774	13	1.9	13	100	0	50	32	16	16	36	1.90
529783--529903	52	2.3	52	97	0	224	34	18	18	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533455--533502	13	3.7	13	83	10	55	87	10	2	0	0.62
533455--533502	16	3.0	15	85	11	60	87	10	2	0	0.62
534435--535204	59	13.2	59	88	4	1013	25	28	20	25	1.99
534435--535208	179	4.4	178	86	6	1036	26	28	20	24	1.99
534963--535052	26	3.3	26	69	19	85	27	35	17	18	1.94
535987--536011	13	1.9	13	100	0	50	36	16	16	32	1.90
536073--536099	13	2.1	13	100	0	54	29	14	14	40	1.86
538295--538419	51	2.4	50	84	6	160	34	24	10	31	1.89
538403--538477	27	2.7	28	89	2	107	24	34	20	21	1.96
538508--538683	52	3.4	52	83	3	228	28	26	13	31	1.93
538295--538683	52	7.4	52	70	13	226	29	26	12	31	1.92
538293--538785	263	1.9	261	85	4	688	27	26	12	32	1.93
541356--541437	1	82.0	1	75	0	56	85	10	2	1	0.75
541358--541435	9	8.9	9	77	14	83	84	11	2	1	0.78
541356--541436	17	4.6	17	80	10	83	85	11	2	1	0.76
541356--541430	24	3.1	24	84	5	89	85	12	1	1	0.73
541359--541444	42	2.0	42	84	8	113	82	12	3	1	0.85
542414--542572	64	2.5	64	85	2	210	26	22	15	35	1.94
542650--542946	68	4.2	71	78	11	259	24	22	13	40	1.90
542647--542955	146	2.1	146	84	6	396	23	22	12	41	1.88
545119--545243	51	2.4	50	84	6	160	32	24	12	32	1.91
545258--545479	51	4.3	51	80	6	207	28	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545305--545479	52	3.4	52	81	7	203	29	26	12	32	1.93
545462--545517	28	2.0	28	92	0	94	23	30	16	30	1.96
545467--545528	28	2.2	28	88	0	88	22	29	20	27	1.99
547658--547897	65	3.7	66	84	2	306	25	22	15	36	1.93
547825--548513	76	9.3	75	74	14	340	23	22	14	39	1.91
547929--548304	146	2.6	145	84	7	462	23	21	14	41	1.89
547760--548439	222	3.1	216	78	11	606	24	22	14	38	1.91
548298--548436	73	1.9	74	89	4	219	24	22	12	40	1.89
548298--548454	73	2.1	74	86	4	212	23	22	13	40	1.90
551501--551590	45	2.0	45	93	2	155	27	31	3	37	1.73
551433--551657	125	1.8	123	81	3	281	30	26	8	34	1.87
551556--551849	80	3.6	79	77	10	297	28	24	12	34	1.92
551801--551900	51	1.9	53	86	9	145	28	25	10	37	1.88
554336--554453	53	2.2	53	93	0	200	29	33	10	26	1.89
557542--557696	79	2.0	79	88	0	229	33	18	18	29	1.95
562450--562810	79	4.6	78	79	7	248	32	10	27	29	1.90
562494--562877	79	4.8	81	78	5	326	33	9	26	30	1.88
562502--562929	158	2.7	158	77	6	379	33	9	26	31	1.88
563934--564123	51	3.7	51	82	3	204	43	12	14	30	1.82
564188--564234	21	2.3	21	92	3	78	34	21	8	36	1.84
564674--564875	70	2.9	70	82	6	225	32	13	27	26	1.93
564737--564869	69	1.9	70	89	4	207	32	12	28	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564806--564947	64	2.3	63	80	8	166	35	17	21	24	1.95
565658--565881	73	3.1	71	75	10	204	37	16	20	25	1.93
565876--566058	70	2.5	71	84	7	219	39	13	23	23	1.90
567156--567190	18	1.9	18	94	0	61	0	0	11	88	0.51
567155--567196	19	2.2	20	91	4	68	2	0	11	85	0.68
567154--567205	19	2.6	21	81	9	63	3	0	13	82	0.80
567154--567204	26	2.0	26	84	7	68	3	0	11	84	0.75
579463--579766	159	1.9	162	81	7	379	33	11	26	28	1.91
579420--579785	79	4.6	81	77	8	285	33	10	25	30	1.89
579420--579790	81	4.7	80	75	11	284	34	10	25	30	1.89

Tables:   1   2   3   4   5   6   7   8   9