genome.fa.s286.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Length:  1428881

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 1075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921662--921713	20	2.7	20	88	8	72	42	17	13	26	1.86
928051--928091	12	3.3	12	89	3	64	85	0	14	0	0.60
928051--928098	12	4.2	12	82	17	57	81	0	18	0	0.70
932552--932582	3	10.3	3	92	0	53	29	35	3	32	1.73
934255--934310	19	2.9	19	83	2	58	33	12	16	37	1.86
936401--936426	13	2.0	13	100	0	52	30	15	15	38	1.88
937126--937171	16	2.8	16	93	6	74	30	39	2	28	1.69
938977--939015	13	3.0	13	96	0	69	35	15	17	30	1.91
939001--939079	20	3.7	20	70	20	70	45	16	12	25	1.82
941088--941125	15	2.5	15	91	0	58	13	21	15	50	1.78
945189--945214	13	2.0	13	100	0	52	30	15	15	38	1.88
946403--946440	13	2.7	14	84	12	51	5	21	2	71	1.19
950989--951048	30	2.0	30	93	0	102	31	21	21	25	1.98
956260--956482	94	2.4	94	84	5	263	19	21	20	37	1.94
956252--956739	47	10.4	46	70	7	223	22	21	18	38	1.94
956973--957091	42	2.8	42	69	15	100	19	31	10	38	1.85
962456--962836	159	2.4	159	83	6	452	35	9	24	29	1.88
962488--962842	79	4.5	78	81	4	392	35	10	24	29	1.89
962771--962892	51	2.4	51	85	1	163	34	11	26	27	1.91
962615--963021	210	1.9	210	84	3	543	36	10	23	29	1.88
962695--962969	131	2.1	130	84	2	345	37	10	23	29	1.88
965346--965423	31	2.5	31	97	0	147	38	12	14	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965924--966248	155	2.1	155	78	6	354	42	17	11	28	1.84
969792--969845	28	1.9	28	88	7	83	31	16	27	24	1.96
969724--969924	76	2.6	78	81	5	212	28	16	29	25	1.97
969882--969950	28	2.5	28	90	0	102	26	18	31	23	1.97
969939--970108	52	3.3	50	79	11	182	32	12	24	29	1.93
970082--970163	27	3.0	28	80	10	89	25	21	30	21	1.99
972570--972595	13	2.0	13	100	0	52	38	15	15	30	1.88
972549--972615	33	2.0	33	88	0	98	43	16	14	25	1.86
972635--972702	19	3.9	18	76	23	83	38	14	11	35	1.83
972657--972681	13	1.9	13	100	0	50	32	16	16	36	1.90
972638--972700	32	2.0	32	96	0	117	36	15	12	34	1.86
972798--972822	1	25.0	1	100	0	50	0	0	0	100	0.00
976540--976565	13	2.0	13	100	0	52	38	15	15	30	1.88
977953--977996	22	2.1	21	87	8	63	45	9	9	36	1.68
978646--978717	36	2.0	35	89	2	108	33	12	29	25	1.92
983460--983503	22	2.1	21	87	8	63	43	9	9	38	1.68
983701--983755	20	2.8	20	94	0	92	34	9	20	36	1.84
984222--984281	32	2.0	30	83	9	77	31	15	23	30	1.95
985432--985463	15	2.0	17	88	11	50	56	9	21	12	1.64
995406--995598	41	4.7	41	74	8	153	48	17	17	17	1.81
996841--996914	27	2.7	27	95	0	130	18	18	39	22	1.93
999839--999893	20	2.8	20	88	5	76	38	12	16	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999923--1000018	19	5.7	19	73	26	108	35	18	12	33	1.89
999917--1000017	32	3.2	32	100	0	202	35	18	11	33	1.88
999942--999998	13	3.9	13	76	24	60	33	17	14	35	1.90
1000723--1001728	49	20.6	49	80	6	1062	31	18	26	23	1.97
1000727--1001728	101	10.3	98	85	4	1036	31	18	26	23	1.97
1000723--1001728	150	6.9	148	81	7	1033	31	18	26	23	1.97
1001513--1001732	43	5.0	43	74	12	187	27	19	27	25	1.99
1002481--1002506	13	2.0	13	100	0	52	30	15	15	38	1.88
1005042--1005073	13	2.5	13	94	0	55	31	15	18	34	1.93
1005066--1005145	20	3.8	20	73	15	61	43	13	13	28	1.83
1008993--1009037	21	2.1	21	84	8	56	22	20	4	53	1.63
1011252--1011277	13	2.0	13	100	0	52	30	15	15	38	1.88
1011708--1011767	27	2.3	26	86	8	86	28	16	31	23	1.96
1011716--1011770	27	2.0	27	96	0	101	27	14	36	21	1.93
1011738--1011920	34	5.4	34	88	6	273	38	13	29	18	1.89
1011715--1011965	102	2.5	95	83	11	308	36	14	29	19	1.92
1011908--1012056	30	4.9	30	87	0	190	34	16	27	20	1.95
1011807--1012067	34	8.2	31	84	5	199	36	14	29	19	1.91
1011908--1012067	62	2.6	61	86	2	214	36	15	28	20	1.93
1013258--1013331	14	5.1	14	81	15	89	1	2	13	82	0.84
1013260--1013331	8	9.9	7	76	18	67	1	2	13	81	0.86
1013258--1013331	29	2.6	28	89	6	112	1	2	13	82	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013258--1013345	29	3.0	28	80	16	99	3	4	13	78	1.04
1013759--1013784	13	2.0	13	100	0	52	38	15	15	30	1.88
1015980--1016024	21	2.1	21	84	8	56	53	4	20	22	1.63
1017828--1017858	15	2.1	15	93	0	53	48	16	22	12	1.80
1019937--1019975	13	3.0	13	100	0	78	30	15	15	38	1.88
1020096--1020141	21	2.2	20	81	11	58	32	19	4	43	1.71
1022528--1022553	13	2.0	13	100	0	52	38	15	15	30	1.88
1031722--1031870	32	4.8	33	75	9	115	26	17	28	28	1.98
1031710--1032092	28	13.1	29	81	9	397	24	17	28	29	1.97
1031769--1032092	85	3.8	85	86	3	418	23	17	29	30	1.97
1032396--1032462	33	2.0	33	88	0	98	34	11	13	40	1.81
1032416--1032440	13	1.9	13	100	0	50	36	16	16	32	1.90
1032503--1032527	13	1.9	13	100	0	50	32	16	16	36	1.90
1035961--1035986	13	2.0	13	100	0	52	30	15	15	38	1.88
1036025--1036100	21	3.7	21	80	3	100	28	17	11	42	1.84
1036046--1036118	20	3.6	20	81	3	101	31	19	13	35	1.91
1036025--1036118	41	2.3	41	98	0	179	29	18	12	39	1.88
1038577--1038615	13	3.0	13	96	0	69	35	15	17	30	1.91
1038601--1038679	20	3.7	20	75	18	70	45	15	13	25	1.83
1040694--1040724	15	2.1	15	93	0	53	12	22	16	48	1.80
1044786--1044811	13	2.0	13	100	0	52	30	15	15	38	1.88
1044850--1044925	21	3.7	21	80	3	100	28	17	11	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044871--1044943	20	3.6	20	81	3	101	31	19	13	35	1.91
1044850--1044943	41	2.3	41	98	0	179	29	18	12	39	1.88
1045835--1046608	27	27.0	28	80	6	366	27	16	28	27	1.97
1045759--1046369	28	20.6	28	78	7	353	25	16	28	28	1.97
1045823--1046243	148	2.8	149	83	4	440	24	16	28	30	1.96
1046116--1046219	32	3.3	32	79	2	104	33	15	19	31	1.93
1045759--1046236	178	2.7	176	84	2	553	25	16	28	29	1.97
1045759--1046329	180	3.2	175	78	6	556	25	16	28	29	1.97
1046331--1046607	82	3.4	82	84	4	337	32	15	28	23	1.95
1047900--1047991	22	4.2	22	78	14	77	5	11	8	73	1.22
1053811--1053861	24	2.2	24	82	6	61	50	5	1	41	1.37
1055482--1055820	129	2.7	127	86	4	477	34	9	11	43	1.74
1059632--1059689	20	3.0	20	89	2	91	65	0	5	29	1.14
1062667--1062693	13	2.1	13	100	0	54	48	0	0	51	1.00
1065490--1065561	32	2.3	31	82	2	81	31	1	1	65	1.10
1074526--1074578	13	4.5	13	69	26	55	28	16	16	37	1.91
1074504--1074602	33	3.0	33	77	5	110	33	17	13	36	1.88
1076254--1076318	33	2.0	33	87	6	96	35	15	13	35	1.87
1076961--1077005	22	2.0	22	95	0	81	22	35	2	40	1.66
1078824--1078850	13	2.1	13	100	0	54	40	14	14	29	1.86
1085920--1085950	9	3.4	9	95	0	53	38	0	35	25	1.56
1090243--1090268	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093385--1093513	52	2.5	52	96	0	231	30	17	17	34	1.93
1093385--1093533	52	2.9	51	89	4	219	31	17	17	33	1.93
1093522--1093546	13	1.9	13	100	0	50	36	16	16	32	1.90
1093587--1093653	33	2.0	33	88	0	98	40	14	11	32	1.83
1093609--1093633	13	1.9	13	100	0	50	32	16	16	36	1.90
1094314--1094365	20	2.4	21	87	9	70	19	50	26	3	1.65
1096414--1096464	20	2.6	20	87	3	68	39	19	13	27	1.90
1096506--1096544	20	1.9	21	94	5	71	38	20	10	30	1.86
1097401--1097468	19	3.9	18	76	23	83	35	11	16	36	1.85
1097422--1097446	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9