genome.fa.s286.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Length:  1428881

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 1075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582552--583003	80	5.7	80	81	3	482	29	25	10	34	1.90
582940--583049	51	2.2	51	82	8	127	25	22	9	42	1.83
582989--583159	79	2.2	77	82	9	195	28	26	11	34	1.90
589503--589571	35	2.0	35	97	0	129	33	21	17	27	1.96
591482--591534	11	4.8	11	82	13	65	81	1	16	0	0.79
591482--591534	22	2.4	22	84	6	72	81	1	16	0	0.79
591479--591535	10	5.5	10	81	6	69	80	1	17	0	0.79
591479--591540	11	5.9	11	81	5	51	79	1	17	1	0.90
592557--592867	91	3.4	91	76	5	243	29	26	15	28	1.96
593098--593216	47	2.6	47	81	4	125	18	19	25	36	1.94
593127--593269	47	3.0	47	80	1	151	19	23	19	37	1.94
593134--593452	48	6.9	48	80	7	273	21	21	19	37	1.94
593249--593328	39	2.0	40	95	2	144	23	23	15	37	1.93
593201--593376	87	2.0	88	86	3	248	23	22	17	36	1.94
593471--594130	44	15.0	44	69	10	287	21	23	15	40	1.90
593555--594061	88	5.8	88	74	9	381	21	23	15	40	1.91
593471--594130	132	5.0	132	75	6	500	21	23	15	40	1.90
593604--594019	176	2.4	175	80	4	453	21	23	15	39	1.91
593999--594197	88	2.3	88	85	3	276	23	23	14	38	1.92
593961--594154	44	4.4	43	74	11	169	23	21	13	41	1.89
594037--594190	44	3.5	43	75	10	159	21	24	14	38	1.91
593904--594197	132	2.2	131	80	4	324	22	22	14	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594374--594515	42	3.4	42	83	5	180	15	28	20	35	1.93
594367--594600	85	2.7	86	78	9	230	17	29	17	35	1.93
594367--594567	42	4.7	42	75	7	174	16	27	19	35	1.94
594480--594627	43	3.5	42	73	8	120	20	26	13	39	1.89
594607--594705	43	2.3	43	82	1	119	15	22	17	45	1.85
594480--594723	128	1.9	128	79	1	274	18	25	15	39	1.91
595918--595970	19	2.7	19	85	2	61	39	13	13	33	1.83
596921--596961	20	2.0	20	86	9	57	21	17	9	51	1.74
602832--602856	13	1.9	13	100	0	50	32	16	16	36	1.90
603550--603600	22	2.4	22	93	3	86	37	21	3	37	1.72
605465--605491	13	2.1	13	100	0	54	40	14	14	29	1.86
611659--611683	13	1.9	13	100	0	50	32	16	16	36	1.90
611774--611798	13	1.9	13	100	0	50	32	16	16	36	1.90
614866--614908	20	2.0	20	82	8	50	37	23	2	37	1.68
614880--614922	20	2.2	20	91	0	68	30	16	9	44	1.79
616415--616441	13	2.1	13	100	0	54	29	14	14	40	1.86
616426--616482	19	2.9	19	82	5	69	35	17	15	31	1.92
617967--618301	169	2.0	168	83	4	424	34	20	8	37	1.83
621446--621574	52	2.5	52	93	0	231	27	17	18	36	1.93
621583--621639	21	2.7	21	100	0	114	31	10	17	40	1.84
622189--622440	39	5.9	39	70	16	119	28	20	25	25	1.99
622369--622437	22	3.2	22	63	19	54	31	18	23	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622181--622496	87	3.5	89	80	7	372	29	18	25	25	1.98
622517--622670	57	2.7	57	93	0	272	21	16	29	32	1.96
622517--622675	29	5.6	28	81	12	198	23	16	28	31	1.96
624110--624190	1	81.0	1	70	0	54	1	3	9	85	0.78
624097--624176	13	5.8	14	76	16	69	1	1	13	83	0.77
624098--624190	9	10.6	9	78	12	79	1	3	11	83	0.81
624097--624176	22	3.5	23	83	8	92	1	1	13	83	0.77
624097--624190	22	4.4	21	77	12	84	1	3	11	84	0.80
624097--624190	37	2.6	35	82	12	109	1	3	11	84	0.80
624097--624178	15	5.4	14	80	16	69	1	1	13	84	0.75
638108--638175	19	3.9	18	76	23	83	38	16	10	35	1.82
638113--638173	32	1.9	32	96	0	113	37	18	9	34	1.83
639321--639449	52	2.5	52	89	0	213	29	17	17	36	1.92
639458--639482	13	1.9	13	100	0	50	36	16	16	32	1.90
639538--639618	19	4.6	19	77	17	93	39	17	11	32	1.85
639527--639597	32	2.2	32	92	0	115	36	18	12	32	1.88
639554--639578	13	1.9	13	100	0	50	32	16	16	36	1.90
640566--640592	13	2.1	13	100	0	54	37	14	7	40	1.74
646925--646964	20	2.0	20	85	14	55	32	22	0	45	1.53
649298--649360	32	1.9	33	87	9	94	30	15	12	41	1.85
649325--649381	19	2.9	19	86	2	78	33	15	15	35	1.90
655867--656207	171	2.0	171	92	1	576	37	19	13	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657986--658032	21	2.3	21	89	10	71	40	14	17	27	1.89
658260--658300	20	2.0	20	95	0	73	26	24	17	31	1.97
660571--660733	75	2.2	76	81	1	184	26	22	11	38	1.89
661832--661886	20	2.7	21	82	2	67	43	12	14	29	1.82
666439--666492	20	2.7	20	91	5	83	35	18	12	33	1.89
666521--666576	19	2.9	19	89	2	76	33	17	17	30	1.94
667171--667212	22	1.9	22	85	0	57	23	30	4	40	1.75
675271--675322	20	2.6	20	90	6	79	32	19	13	34	1.90
680005--680062	20	2.7	22	86	5	84	41	12	17	29	1.85
682410--682546	52	2.7	51	85	3	177	32	14	12	40	1.83
688139--688188	25	2.0	25	92	0	82	24	12	14	50	1.76
703731--703859	52	2.5	52	93	2	215	31	18	16	33	1.93
703731--703880	52	2.9	52	89	4	187	32	18	16	32	1.93
704256--704286	13	2.4	13	94	0	53	35	16	12	35	1.87
704240--704306	33	2.0	32	88	11	100	35	13	17	32	1.89
706493--706545	3	17.3	3	92	3	70	35	5	0	58	1.22
706866--706942	25	3.1	25	65	10	68	54	1	3	40	1.27
706853--707260	49	8.0	48	74	17	262	56	3	1	38	1.27
706945--706994	18	2.6	20	72	18	52	64	4	0	32	1.12
706889--707260	101	3.7	101	77	18	350	56	3	1	37	1.27
706908--707260	156	2.3	148	83	10	423	56	3	1	38	1.27
707326--707570	22	11.3	22	71	10	121	44	11	6	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707294--707550	44	6.0	44	72	9	190	44	10	5	38	1.64
707653--707776	51	2.4	52	79	8	135	45	3	4	47	1.37
707706--707858	55	2.9	53	81	3	148	37	2	5	53	1.39
707828--707906	35	2.2	36	79	4	97	34	3	7	54	1.47
707775--707944	90	1.9	91	81	9	213	35	3	5	55	1.41
707867--708012	53	2.8	53	79	9	156	35	2	5	56	1.37
707730--707993	143	1.9	141	81	7	311	35	3	6	54	1.41
707944--708081	69	2.0	67	83	5	170	38	2	7	52	1.41
708011--708157	53	2.7	54	80	9	167	41	2	4	51	1.34
708903--708956	20	2.7	20	88	5	74	37	14	12	35	1.85
708988--709039	19	2.7	20	82	11	72	36	15	15	32	1.89
709025--709051	13	2.1	13	100	0	54	40	14	14	29	1.86
709006--709070	33	2.0	32	87	3	94	41	13	15	29	1.86
711433--711471	21	1.9	21	89	5	62	43	0	23	33	1.54
716791--716846	19	2.8	20	79	12	71	35	17	12	33	1.88
717167--717370	52	3.8	53	76	7	214	38	0	8	51	1.38
717343--717414	23	3.2	22	72	18	67	37	2	1	58	1.21
717313--717415	45	2.3	45	86	0	134	34	1	5	57	1.34
717388--717589	51	3.9	54	71	17	137	39	1	4	54	1.29
717874--717913	21	1.9	21	90	10	64	42	0	2	55	1.13
717866--717913	21	2.5	18	83	12	60	39	0	4	56	1.19
718234--718278	18	2.5	19	79	13	51	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718631--718657	2	13.5	2	100	0	54	48	0	0	51	1.00
719962--719993	2	16.0	2	93	0	55	46	0	3	50	1.17
720104--720136	7	4.7	7	100	0	66	0	15	12	72	1.12
720661--720708	6	7.5	6	82	13	51	56	2	0	41	1.11
720661--720695	2	17.5	2	87	0	52	54	0	0	45	0.99
722818--722889	28	2.6	28	88	0	99	23	19	34	22	1.96
722676--722863	79	2.4	78	81	2	216	32	17	26	22	1.96
722877--723047	51	3.3	51	81	4	207	33	11	25	29	1.91
725568--725593	13	2.0	13	100	0	52	38	15	15	30	1.88
725547--725613	33	2.0	33	88	0	98	43	16	14	25	1.86

Tables:   1   2   3   4   5   6   7   8   9