genome.fa.s286.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Length:  1428881

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097403--1097465	32	2.0	32	96	0	117	34	12	17	34	1.88
1097508--1097533	13	2.0	13	100	0	52	30	15	15	38	1.88
1099900--1100284	52	7.3	52	68	13	164	30	24	12	32	1.92
1100006--1100080	27	2.8	26	85	6	96	25	32	20	22	1.98
1100273--1100336	28	2.3	28	86	0	83	23	26	20	29	1.99
1112767--1112852	1	86.0	1	76	0	82	88	8	3	0	0.62
1112767--1112852	15	6.1	14	83	6	95	88	8	3	0	0.62
1112767--1112852	35	2.5	35	88	0	118	88	8	3	0	0.62
1113821--1114448	55	10.9	58	87	6	686	26	27	21	25	1.99
1113816--1114462	171	3.8	172	85	5	777	25	26	20	26	1.99
1113847--1114462	226	2.7	224	85	6	758	25	26	20	26	1.99
1115241--1115308	19	3.9	18	76	23	83	35	11	16	36	1.85
1115262--1115286	13	1.9	13	100	0	50	36	16	16	32	1.90
1115243--1115305	32	2.0	32	96	0	117	34	12	17	34	1.88
1115348--1115373	13	2.0	13	100	0	52	30	15	15	38	1.88
1115328--1115394	34	2.0	33	91	2	107	25	16	13	44	1.84
1117746--1117871	52	2.4	53	84	5	166	32	25	11	30	1.91
1117913--1118135	52	4.3	52	79	7	195	28	25	13	33	1.93
1117960--1118135	52	3.4	52	80	8	196	28	26	13	31	1.93
1118123--1118189	28	2.4	28	89	0	98	25	25	19	29	1.98
1120097--1120150	20	2.7	20	94	0	99	40	12	11	35	1.79
1120450--1120773	79	4.1	78	80	7	268	33	14	24	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120737--1120805	28	2.5	28	85	4	86	28	18	27	24	1.98
1120788--1120904	51	2.3	51	84	7	157	30	12	23	32	1.92
1123954--1124210	41	6.0	41	71	13	135	43	12	23	20	1.86
1123946--1124249	83	3.6	88	78	7	283	43	12	24	19	1.86
1124222--1124847	61	10.4	59	78	8	523	28	18	26	26	1.98
1124221--1124852	122	5.2	120	82	6	597	28	18	26	25	1.98
1124216--1124852	183	3.5	178	82	7	702	29	18	27	25	1.98
1128059--1128094	9	4.0	9	88	0	54	19	30	36	13	1.91
1128272--1128423	39	3.7	39	71	14	133	27	24	19	28	1.99
1128234--1128473	87	2.7	87	90	0	372	27	24	18	29	1.98
1128390--1128865	49	9.6	49	81	5	519	24	27	17	31	1.97
1128390--1128865	147	3.2	146	85	3	587	24	27	17	31	1.97
1128779--1128874	47	2.1	46	84	2	120	19	28	17	34	1.95
1129678--1129740	33	1.9	33	87	6	92	33	17	11	38	1.85
1138115--1138188	30	2.5	30	81	0	103	28	31	13	27	1.94
1138190--1138556	34	11.4	32	75	14	240	20	31	12	35	1.90
1138211--1138352	27	4.7	27	72	23	99	21	30	14	33	1.93
1138190--1138556	33	11.4	33	76	12	266	20	31	12	35	1.90
1138191--1138525	95	3.5	94	81	9	356	20	31	12	35	1.90
1138232--1138556	33	9.9	33	77	8	290	20	32	12	35	1.90
1138553--1139494	49	19.8	49	75	11	787	25	25	17	31	1.97
1138852--1139003	39	3.7	39	72	14	142	27	25	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1138789--1139052	87	3.0	86	86	3	359	27	25	19	28	1.99
1140260--1140285	13	2.0	13	100	0	52	30	15	15	38	1.88
1143662--1143706	19	2.4	19	85	7	56	44	13	13	28	1.81
1146828--1146975	52	2.9	52	86	5	219	31	16	18	33	1.93
1146964--1146988	13	1.9	13	100	0	50	36	16	16	32	1.90
1147053--1147077	13	1.9	13	100	0	50	32	16	16	36	1.90
1147031--1147097	33	2.0	33	88	0	98	40	13	11	34	1.81
1148292--1148344	20	2.6	21	87	3	72	39	13	16	30	1.87
1150623--1150667	21	2.1	21	84	8	56	53	4	20	22	1.63
1152472--1152502	15	2.1	15	93	0	53	48	16	22	12	1.80
1157149--1157174	13	2.0	13	100	0	52	38	15	15	30	1.88
1159169--1159410	82	3.0	82	73	10	277	42	5	22	28	1.77
1160076--1160128	20	2.7	20	93	0	88	32	11	18	37	1.87
1160604--1160663	31	2.0	31	93	3	104	35	15	20	30	1.93
1162022--1162407	158	2.5	150	79	10	347	33	13	18	33	1.91
1162351--1163050	316	2.2	315	82	3	829	35	14	18	31	1.91
1162450--1162993	158	3.4	159	73	8	441	35	14	18	31	1.91
1164317--1164342	13	2.0	13	100	0	52	30	15	15	38	1.88
1164297--1164360	33	2.0	32	90	3	101	29	12	21	35	1.91
1164421--1164445	13	1.9	13	100	0	50	36	16	16	32	1.90
1166733--1166774	22	2.0	21	86	13	61	40	0	21	38	1.53
1173176--1173200	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1174083--1174753	304	2.2	305	80	4	703	37	14	19	28	1.90
1175092--1175569	149	3.2	150	70	10	380	36	14	17	31	1.90
1175113--1175711	300	2.0	301	85	1	797	35	13	19	31	1.90
1176673--1177155	243	2.0	243	95	0	876	29	11	19	39	1.86
1180254--1180753	159	3.2	158	87	3	713	38	12	17	33	1.86
1180710--1181272	312	1.8	312	82	4	742	35	13	18	31	1.90
1182309--1183118	154	5.3	154	71	12	456	37	19	18	24	1.93
1184512--1184542	13	2.4	13	94	0	53	3	19	0	77	0.90
1185116--1186000	166	5.4	163	81	6	953	51	8	12	27	1.68
1185116--1186113	166	6.0	166	78	7	563	51	8	12	28	1.68
1187498--1187946	160	2.8	158	78	8	473	38	14	16	30	1.89
1186990--1188604	776	2.1	774	80	4	1826	36	14	17	30	1.91
1189135--1189176	20	2.1	20	100	0	84	28	19	9	42	1.82
1192043--1192452	150	2.7	150	83	5	490	25	19	17	37	1.93
1192347--1192716	131	2.8	132	82	1	463	23	18	18	40	1.91
1199296--1199349	20	2.6	21	88	2	83	29	14	12	42	1.83
1201499--1201550	19	2.7	20	81	6	61	28	11	17	42	1.84
1201499--1201556	19	3.0	18	78	12	53	25	10	20	43	1.84
1203602--1203644	20	2.1	20	82	4	50	11	27	41	18	1.85
1204085--1204122	13	2.9	13	96	0	67	31	15	18	34	1.92
1206234--1206264	15	2.1	15	93	0	53	12	22	16	48	1.80
1210311--1210362	19	2.7	20	84	6	70	28	13	17	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210311--1210368	19	3.0	18	80	12	62	25	12	20	41	1.87
1217407--1217852	153	2.9	151	78	4	457	37	18	18	26	1.93
1218136--1218204	29	2.4	29	92	0	111	34	27	2	34	1.72
1221788--1221825	3	12.7	3	100	0	76	34	0	34	31	1.58
1226662--1226705	19	2.3	19	92	0	70	70	0	13	15	1.17
1227128--1227167	20	2.0	20	85	0	53	67	2	30	0	1.04
1233012--1238095	158	32.1	157	68	10	958	30	18	14	35	1.91
1232946--1234442	633	2.4	632	87	2	2067	31	19	13	35	1.91
1233775--1235407	475	3.4	473	84	3	2030	31	18	14	34	1.92
1232946--1234688	633	2.8	631	82	4	1586	31	19	14	35	1.91
1233775--1235490	949	1.8	945	82	4	2164	31	19	14	34	1.92
1235358--1236989	474	3.4	472	85	3	2136	31	18	14	35	1.92
1235515--1239370	950	4.0	937	77	8	2285	31	18	14	35	1.91
1236940--1239872	476	6.1	475	82	3	3373	30	19	14	36	1.91
1238372--1238405	17	2.0	17	94	0	59	35	32	2	29	1.73
1240185--1240209	13	1.9	13	100	0	50	32	16	16	36	1.90
1240300--1240325	13	2.0	13	100	0	52	30	15	15	38	1.88
1240280--1240347	33	2.1	32	91	2	109	35	19	13	32	1.90
1246630--1246670	22	2.0	20	86	13	57	31	21	4	41	1.74
1248942--1248966	13	1.9	13	100	0	50	32	16	16	36	1.90
1249056--1249081	13	2.0	13	100	0	52	30	15	15	38	1.88
1249036--1249103	33	2.1	32	91	2	109	35	19	13	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1250724--1251054	158	2.1	155	83	3	405	30	17	15	36	1.91
1250750--1251086	155	2.2	158	83	4	423	29	16	16	37	1.91
1251220--1252039	420	2.0	406	82	6	1006	31	17	12	38	1.87
1251621--1257852	476	13.1	477	76	9	2673	31	18	13	36	1.90
1253476--1253814	178	1.9	178	78	6	373	30	16	16	36	1.91
1256405--1257586	159	7.5	160	68	9	563	31	19	13	35	1.90
1257877--1265168	476	15.5	476	73	9	4047	30	19	14	35	1.92
1258256--1259866	159	10.2	159	66	11	462	30	19	14	35	1.91
1260316--1260629	148	2.1	148	83	6	378	32	18	15	34	1.92
1259929--1261056	624	1.8	625	83	3	1493	32	19	13	35	1.90

Tables:   1   2   3   4   5   6   7   8   9