genome.fa.s286.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold286
Parameters: 2 7 7 80 10 50 1000
Length:  1428881

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311089--311113	13	1.9	13	100	0	50	36	16	16	32	1.90
311701--311725	12	2.1	12	100	0	50	52	16	16	16	1.76
313084--313128	20	2.1	21	84	8	56	6	28	46	17	1.73
313570--313607	13	2.9	13	88	0	58	39	18	13	28	1.88
314848--314913	19	3.8	19	77	22	90	33	12	18	36	1.88
314849--314911	32	2.0	32	100	0	126	33	12	19	34	1.89
314868--314892	13	1.9	13	100	0	50	36	16	16	32	1.90
314988--315064	32	2.4	32	95	0	145	31	20	19	28	1.97
315949--315987	20	2.0	20	89	0	60	23	17	12	46	1.83
328834--328895	10	5.9	10	84	7	79	85	9	3	1	0.78
328834--328906	21	3.2	22	76	9	76	84	10	2	1	0.78
328813--328888	32	2.4	32	86	2	100	82	6	9	1	0.88
330347--330400	28	1.9	28	96	0	99	33	33	18	14	1.92
330336--330434	30	3.4	30	80	10	123	25	34	16	24	1.95
330406--330516	34	3.2	34	88	3	152	19	34	12	33	1.90
330406--330529	34	3.6	34	86	3	151	19	33	15	32	1.93
330524--330968	49	9.1	49	83	8	527	24	27	18	30	1.98
330524--330968	149	3.0	149	91	3	683	24	27	18	30	1.98
331842--331939	19	5.8	19	73	26	103	33	12	18	35	1.88
331862--331887	13	2.0	13	100	0	52	38	15	15	30	1.88
331893--331919	13	2.1	13	100	0	54	29	14	14	40	1.86
331842--331938	32	3.0	32	93	0	176	32	12	18	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331981--332005	13	1.9	13	100	0	50	32	16	16	36	1.90
332014--332139	52	2.4	52	93	0	216	34	17	19	27	1.95
340144--340169	13	2.0	13	100	0	52	30	15	15	38	1.88
340124--340187	33	2.0	32	87	3	92	26	12	20	40	1.88
341894--341919	10	2.6	10	100	0	52	73	0	7	19	1.07
342363--342439	39	2.0	39	89	0	118	24	23	24	27	2.00
342710--342786	39	2.0	39	86	0	109	24	22	24	28	1.99
342145--342879	347	2.1	347	94	0	1290	34	17	24	23	1.96
342710--342984	87	3.1	87	78	7	275	30	20	24	25	1.98
342890--342958	22	3.2	22	64	12	52	31	18	23	26	1.97
342836--343010	49	3.7	49	74	11	150	30	17	24	27	1.97
342712--343015	87	3.4	92	78	6	245	30	19	23	26	1.98
343090--343164	27	2.7	27	79	8	80	22	17	37	22	1.94
343105--343164	27	2.2	27	84	0	84	26	18	35	20	1.95
343133--343234	34	3.0	34	97	0	186	35	11	35	17	1.87
343094--343230	34	4.5	28	81	12	87	29	14	35	21	1.93
344821--344878	12	4.5	12	81	16	64	0	3	17	79	0.87
344829--344878	5	10.2	5	81	14	52	0	2	18	80	0.82
344821--344876	20	2.8	19	80	17	69	0	3	16	80	0.85
350132--350189	13	4.0	13	74	23	53	31	17	17	34	1.93
353604--353671	19	3.9	18	71	23	65	38	17	10	33	1.84
353609--353669	32	1.9	32	93	0	104	37	18	11	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354887--355078	79	2.5	79	83	6	214	39	11	19	29	1.87
358105--358197	38	2.5	38	76	1	107	27	16	12	43	1.84
361734--361799	33	2.0	33	85	5	89	30	13	13	42	1.83
361849--361940	20	4.7	19	81	9	60	42	15	13	29	1.84
361887--361941	20	2.8	20	100	0	110	40	14	14	30	1.86
362025--362078	22	2.5	21	77	11	56	48	12	5	33	1.65
362435--362591	32	5.0	30	78	15	147	31	24	12	31	1.92
362432--362591	65	2.5	64	82	8	225	31	24	12	31	1.92
363011--363118	52	2.1	52	83	0	135	33	17	13	35	1.90
369031--369055	13	1.9	13	100	0	50	48	20	0	32	1.50
370395--371053	79	8.4	79	79	8	592	32	12	25	28	1.93
370395--371053	236	2.8	236	81	4	699	32	12	25	28	1.93
370992--371155	50	3.2	50	81	5	161	33	8	24	33	1.86
370993--371156	51	3.2	51	82	5	181	33	9	23	33	1.87
371096--371308	74	2.8	76	79	6	218	32	10	25	31	1.89
371245--371359	51	2.3	51	90	0	176	32	6	27	33	1.81
378166--378814	79	8.2	78	83	4	603	35	13	22	28	1.92
378157--378814	237	2.8	235	80	5	734	36	13	21	28	1.92
378754--378853	51	2.0	51	84	4	130	39	12	18	31	1.87
378671--378943	130	2.1	131	80	5	304	35	12	21	30	1.91
378500--379097	288	2.1	286	82	6	726	35	13	22	28	1.92
378799--379095	79	3.8	78	83	2	328	32	12	25	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378799--379097	157	1.9	156	82	4	370	32	13	25	29	1.93
382364--382775	154	2.7	153	84	3	508	34	8	9	48	1.66
383983--384025	21	2.0	21	82	8	52	20	2	16	60	1.46
385134--385181	19	2.5	20	89	3	71	31	16	12	39	1.86
385249--385316	32	2.1	32	86	0	91	38	19	13	29	1.89
386851--386876	13	2.0	13	100	0	52	38	15	15	30	1.88
390327--390357	15	2.1	15	93	0	53	48	16	22	12	1.80
392374--392453	20	3.8	20	75	15	79	26	15	15	43	1.85
392439--392477	13	3.0	13	96	0	69	30	17	15	35	1.91
392601--392647	21	2.3	21	79	20	55	34	19	4	42	1.70
392603--392645	20	2.2	19	84	16	52	32	18	4	44	1.71
395024--395049	13	2.0	13	100	0	52	38	15	15	30	1.88
395879--396280	52	7.5	52	72	10	274	35	15	23	24	1.94
395801--396194	113	3.6	109	77	10	397	36	15	24	23	1.94
395815--396295	217	2.2	219	82	2	565	36	15	23	23	1.94
396288--396684	32	12.6	32	81	6	373	21	16	30	31	1.95
397274--397326	26	2.1	25	96	3	97	26	0	39	33	1.57
403823--403848	13	2.0	13	100	0	52	30	15	15	38	1.88
406402--406437	13	2.8	13	91	0	54	33	8	19	38	1.82
412210--412235	13	2.0	13	100	0	52	30	15	15	38	1.88
412306--412360	20	2.8	20	88	5	76	29	12	16	41	1.85
413799--413876	20	3.7	20	74	15	75	28	14	15	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413865--413889	13	1.9	13	100	0	50	32	20	16	32	1.94
416441--416466	13	2.0	13	100	0	52	38	15	15	30	1.88
416423--416486	32	2.0	33	87	3	94	40	17	14	28	1.88
420286--420310	11	2.3	11	100	0	50	56	16	0	28	1.41
428029--428083	12	4.5	12	78	13	58	76	0	21	1	0.88
428030--428107	11	6.6	11	73	15	59	74	1	20	3	1.05
429878--429917	21	2.0	21	90	5	64	32	20	0	47	1.50
435694--435754	32	1.9	32	93	0	104	37	16	11	34	1.85
435689--435755	19	3.8	19	75	22	74	37	14	11	35	1.84
437871--437934	25	2.6	24	87	5	83	85	6	4	3	0.80
437871--437946	24	3.2	24	87	7	93	84	5	6	3	0.87
437871--437927	1	57.0	1	76	0	51	87	5	5	1	0.72
437883--437946	6	10.7	6	80	12	51	82	6	6	4	0.93
438547--438826	114	2.5	114	77	6	266	36	15	12	35	1.85
439366--439535	88	1.9	88	81	3	207	22	20	15	42	1.89
448375--448410	16	2.2	16	90	0	54	13	16	11	58	1.63
449295--449339	20	2.1	21	80	16	56	51	24	6	17	1.70
449424--449475	20	2.6	20	87	6	70	34	11	23	30	1.90
450425--450619	43	4.5	43	72	7	146	18	24	16	40	1.91
450429--450617	86	2.2	87	81	3	213	19	24	15	39	1.91
450705--450944	41	6.0	40	69	9	123	17	22	12	47	1.82
450700--450966	79	3.4	79	74	5	245	17	21	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450948--451559	43	14.3	43	72	7	282	21	22	16	39	1.91
451101--451457	130	2.8	128	81	3	371	21	24	15	38	1.92
451085--451521	128	3.4	126	78	6	378	20	23	16	40	1.91
451098--451576	128	3.7	128	78	5	360	21	24	14	38	1.91
451004--451588	85	6.9	87	74	8	335	21	24	14	39	1.91
451621--451898	41	6.8	41	81	2	281	20	24	16	37	1.93
451621--451910	123	2.4	123	81	3	341	20	25	16	37	1.93
452978--453384	154	2.6	153	80	4	451	33	10	7	48	1.65
454833--455180	85	4.1	84	77	8	289	34	10	25	29	1.90
458732--458756	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4   5   6   7   8   9