genome.fa.s31.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold31
Parameters: 2 7 7 80 10 50 1000
Length:  2401195

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1858 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2282677--2282730	19	2.8	20	80	2	65	31	11	18	38	1.86
2282759--2282812	20	2.7	20	82	5	65	33	14	16	35	1.90
2291508--2291561	20	2.8	19	82	2	63	31	12	18	37	1.89
2291590--2291643	20	2.7	20	85	5	74	35	11	14	38	1.82
2295971--2296032	19	3.6	19	72	28	75	35	19	11	33	1.87
2295954--2296032	31	2.5	32	89	6	126	32	20	12	34	1.90
2296091--2296129	21	1.9	20	94	5	69	35	12	15	35	1.86
2296238--2296268	16	2.0	15	93	6	53	45	19	3	32	1.66
2297301--2297342	18	2.3	18	87	0	57	52	0	7	40	1.29
2297641--2297673	2	16.5	2	100	0	66	51	0	0	48	1.00
2297900--2297971	37	2.0	36	83	8	92	59	1	4	34	1.25
2299012--2299044	18	1.9	18	88	11	52	36	6	12	45	1.66
2300238--2300289	17	3.0	17	74	2	50	38	5	3	51	1.44
2313548--2313601	20	2.6	21	85	5	74	33	18	11	37	1.86
2316067--2316105	14	2.7	14	84	4	51	15	7	5	71	1.26
2317454--2317500	11	3.8	12	81	13	51	40	21	6	31	1.78
2317454--2317502	26	2.0	24	88	8	71	40	20	6	32	1.77
2317480--2317559	35	2.3	35	88	0	115	42	17	7	32	1.77
2320620--2321417	406	2.0	406	97	0	1499	29	18	22	29	1.97
2322534--2322613	35	2.3	35	88	0	124	43	16	7	32	1.76
2323537--2323608	19	3.7	19	66	14	56	51	5	18	25	1.67
2323521--2323601	40	2.0	40	100	0	162	45	9	17	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2324701--2324782	39	2.3	36	85	12	107	13	3	41	41	1.62
2337767--2337801	15	2.4	15	90	4	54	54	5	2	37	1.39
2339672--2339739	2	34.0	2	84	0	91	50	4	2	42	1.37
2339668--2339739	18	4.0	18	94	0	117	50	5	2	41	1.40
2349547--2349576	2	15.0	2	100	0	60	50	0	0	50	1.00
2350553--2350590	18	1.9	19	85	15	51	39	2	0	57	1.12
2355298--2355353	21	2.7	21	97	0	103	28	10	17	42	1.83
2356259--2356319	2	30.5	2	77	6	52	44	3	8	44	1.50
2358604--2358670	20	3.7	20	74	25	85	31	16	19	32	1.94
2358605--2358667	33	1.9	33	100	0	126	31	15	20	31	1.94
2361189--2361214	13	2.0	13	100	0	52	30	15	15	38	1.88
2361169--2361232	32	2.0	33	90	3	103	28	14	15	42	1.86
2362553--2362587	17	2.1	17	100	0	70	40	22	11	25	1.88
2363785--2363822	13	2.9	13	88	0	58	31	13	18	36	1.89
2365856--2365886	15	2.1	15	93	0	53	12	22	16	48	1.80
2370545--2370576	16	2.0	17	88	11	50	50	12	21	15	1.77
2372124--2372198	19	4.3	19	74	20	56	40	12	14	33	1.83
2372136--2372160	13	1.9	13	100	0	50	36	16	16	32	1.90
2372149--2372197	19	2.6	19	96	3	91	32	12	18	36	1.88
2372283--2372411	52	2.5	52	93	0	222	34	15	19	30	1.93
2376038--2376090	18	2.7	20	75	21	58	22	1	20	54	1.54
2376336--2376378	21	2.0	22	86	4	61	27	20	0	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2381150--2381275	20	5.7	20	72	20	108	41	11	15	30	1.84
2382106--2382742	28	22.0	28	82	5	623	23	17	29	29	1.97
2382107--2382742	85	7.3	85	83	5	722	23	17	29	29	1.97
2382153--2382715	260	2.2	260	88	2	832	23	17	29	29	1.97
2382751--2382789	14	2.9	13	85	7	51	35	15	15	33	1.89
2383973--2384035	21	3.0	20	82	17	76	1	3	12	82	0.86
2383989--2384037	10	5.0	10	78	14	57	0	2	16	81	0.78
2383988--2384025	11	3.5	11	89	3	60	0	2	13	84	0.73
2383987--2384035	11	4.5	11	84	5	55	0	2	12	85	0.68
2398195--2398327	51	2.6	51	92	0	230	44	11	16	27	1.82
2398240--2398347	20	4.8	20	73	22	81	44	10	16	28	1.80
2400169--2400200	15	2.1	16	94	5	57	25	6	65	3	1.31
2400170--2400206	15	2.5	15	83	16	51	24	5	64	5	1.36
2401142--2401171	15	2.1	15	93	6	53	3	6	0	90	0.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!