genome.fa.s312.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Length:  1822960

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  10  of  12  ( 1415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1436284--1436308	13	1.9	13	100	0	50	36	16	16	32	1.90
1436264--1436329	32	2.0	33	94	2	116	34	12	16	36	1.86
1441161--1441256	47	2.0	47	96	4	176	39	16	12	31	1.86
1445763--1445813	20	2.7	19	79	8	59	39	9	15	35	1.81
1449127--1449167	19	2.1	20	86	4	57	17	9	0	73	1.09
1451431--1451482	23	2.2	25	82	6	63	65	5	13	15	1.44
1453792--1453854	32	2.0	30	88	11	92	34	12	17	34	1.88
1453790--1453852	17	3.8	17	73	26	64	33	12	17	36	1.88
1458926--1459044	51	2.3	51	82	5	143	34	13	23	28	1.93
1459029--1459099	28	2.5	28	84	8	92	28	19	29	22	1.98
1459055--1459308	79	3.2	79	86	3	334	29	14	27	27	1.96
1459231--1459372	50	2.9	50	86	3	198	33	11	27	28	1.91
1461804--1461857	21	2.7	20	77	8	65	38	14	12	33	1.85
1465454--1465482	14	2.0	15	93	6	51	41	6	6	44	1.58
1472988--1473085	48	2.0	48	96	0	178	40	16	12	30	1.85
1481622--1481662	21	2.0	21	85	0	55	51	0	0	48	1.00
1483568--1483600	15	2.3	15	89	5	50	27	3	9	60	1.42
1483692--1483725	17	1.9	18	94	5	61	67	0	0	32	0.91
1486690--1486787	48	2.0	48	100	0	196	40	16	12	30	1.85
1495329--1495369	21	2.0	21	85	0	55	51	0	0	48	1.00
1497275--1497307	15	2.3	15	89	5	50	27	3	9	60	1.42
1497399--1497432	17	1.9	18	94	5	61	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1502541--1502586	17	2.7	18	83	9	53	69	2	0	28	1.00
1505326--1505379	21	2.6	21	93	0	90	33	11	16	38	1.84
1505320--1505391	21	3.5	20	74	9	63	36	12	15	36	1.85
1505436--1505657	32	7.2	32	90	9	372	33	12	18	35	1.88
1505595--1505642	23	2.1	23	96	0	87	31	8	18	41	1.80
1505701--1505726	13	2.0	13	100	0	52	30	15	15	38	1.88
1505681--1505747	34	2.0	34	88	8	102	23	16	13	46	1.82
1508090--1508187	51	1.9	51	84	12	130	32	18	9	39	1.82
1508188--1508264	27	2.8	27	86	5	102	23	32	19	24	1.97
1508217--1508396	80	2.3	80	87	2	247	25	27	16	31	1.96
1508331--1508500	52	3.3	52	80	4	200	29	27	10	32	1.90
1508483--1508554	27	2.6	27	89	6	101	26	33	18	22	1.96
1508507--1508684	80	2.2	80	87	4	245	25	29	15	28	1.96
1508114--1508723	290	2.1	286	93	1	1024	27	26	13	32	1.93
1509066--1509091	13	2.0	13	100	0	52	38	15	15	30	1.88
1509048--1509111	32	2.0	33	87	3	94	42	14	14	29	1.84
1515270--1515307	13	2.9	13	88	11	60	31	18	18	31	1.95
1515425--1515470	21	2.2	20	81	11	58	32	19	4	43	1.71
1517143--1517233	39	2.3	40	79	9	105	39	5	20	34	1.76
1517859--1517911	19	2.7	20	85	5	72	41	13	13	32	1.82
1518238--1518308	20	3.5	20	77	11	74	39	15	14	30	1.87
1518278--1518414	53	2.6	53	92	1	229	36	17	18	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1518523--1518560	13	2.9	13	92	0	58	31	13	18	36	1.89
1519031--1519097	37	1.9	35	88	11	102	32	11	25	29	1.92
1523018--1524072	49	21.7	51	71	16	364	32	18	24	23	1.97
1523293--1523564	136	2.0	138	91	2	449	31	20	25	22	1.98
1523248--1523807	237	2.4	237	95	0	1021	32	19	25	22	1.97
1523631--1523846	39	5.0	39	68	20	135	29	19	24	25	1.99
1523530--1524097	273	2.1	274	92	1	951	31	19	24	24	1.98
1523856--1524015	88	1.8	87	86	1	230	32	20	22	25	1.98
1523530--1524097	136	4.1	136	93	1	947	31	19	24	24	1.98
1524255--1524322	21	3.2	21	64	25	52	25	29	17	27	1.97
1524199--1524928	92	7.9	92	93	0	1172	24	25	18	31	1.97
1524829--1524975	52	2.7	54	82	5	165	26	22	15	35	1.94
1524978--1525429	43	9.8	43	79	13	445	24	24	18	32	1.97
1524978--1525429	92	4.9	91	86	6	501	24	24	18	32	1.97
1525126--1525193	21	3.2	21	64	32	54	25	26	17	30	1.97
1525383--1525520	52	2.6	55	82	5	167	24	23	15	36	1.94
1526385--1526409	13	1.9	13	100	0	50	36	16	16	32	1.90
1526473--1526497	13	1.9	13	100	0	50	32	16	16	36	1.90
1526506--1526626	52	2.3	52	95	0	215	35	18	17	28	1.93
1532479--1532512	16	2.1	16	94	0	59	82	8	8	0	0.85
1533353--1533398	8	5.6	8	92	5	65	45	23	4	26	1.71
1533492--1533616	31	4.0	31	82	8	139	26	29	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533508--1533648	32	4.5	30	80	9	124	25	29	15	29	1.96
1533530--1533648	62	1.9	62	86	3	168	25	28	15	30	1.96
1533628--1533744	61	1.9	63	87	3	175	26	33	12	27	1.93
1533618--1534037	95	4.3	93	71	12	326	21	33	12	31	1.91
1533617--1534037	96	4.4	95	72	12	347	21	33	12	32	1.91
1533725--1534098	61	5.9	61	81	9	428	21	34	13	30	1.92
1533954--1534063	27	3.8	27	74	15	112	22	37	16	23	1.94
1534082--1534208	32	4.0	33	88	9	160	26	37	17	18	1.92
1534105--1534208	32	3.3	32	92	7	178	28	37	18	15	1.91
1534381--1535430	43	23.0	43	74	14	789	24	24	17	32	1.97
1534346--1534889	92	5.9	92	91	0	863	24	25	17	32	1.97
1534790--1534936	52	2.7	55	85	5	194	26	23	14	35	1.94
1534622--1535203	319	1.8	314	91	2	968	24	24	18	32	1.97
1534941--1535483	92	5.9	92	93	1	908	24	25	18	31	1.97
1535384--1535537	52	2.9	53	80	6	186	24	23	15	36	1.94
1536387--1536411	13	1.9	13	100	0	50	36	16	16	32	1.90
1536473--1536497	13	1.9	13	100	0	50	32	16	16	36	1.90
1536486--1536626	52	2.7	52	91	2	230	34	17	17	30	1.94
1537410--1537436	9	3.0	9	100	0	54	22	0	22	55	1.44
1539867--1539934	27	2.5	27	95	0	127	29	10	35	25	1.89
1539901--1540134	34	7.0	35	73	14	158	34	12	31	20	1.91
1539901--1540187	31	8.9	31	76	11	197	32	13	31	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1539968--1540188	62	3.5	62	79	10	241	32	14	30	23	1.94
1541831--1541870	15	2.7	15	80	0	53	82	2	12	2	0.87
1542617--1542692	12	6.9	11	75	15	52	39	2	48	9	1.49
1542616--1542701	24	3.8	24	72	17	85	41	2	45	10	1.51
1542607--1542725	42	2.8	42	90	0	184	43	2	45	8	1.47
1554166--1554294	52	2.5	52	93	0	222	28	19	17	34	1.94
1554300--1554326	13	2.1	13	100	0	54	37	18	14	29	1.91
1554366--1554455	13	6.0	13	71	26	63	34	17	13	34	1.89
1554380--1554442	19	3.6	19	76	24	84	34	19	12	33	1.89
1554367--1554456	32	2.8	32	98	0	171	35	17	13	33	1.89
1555112--1555201	44	2.0	44	100	0	180	38	21	13	26	1.90
1555473--1555540	14	5.1	14	72	24	58	57	0	1	41	1.08
1555470--1555545	5	15.4	5	72	16	52	57	0	1	40	1.07
1555517--1555548	10	3.2	10	100	0	64	50	0	0	50	1.00
1563381--1563421	18	2.3	19	79	12	50	51	2	2	43	1.28
1563404--1563438	15	2.2	16	90	5	54	45	0	2	51	1.16
1564279--1564308	15	2.1	15	93	6	53	50	0	0	50	1.00
1566490--1566529	9	4.2	9	84	12	53	47	0	2	50	1.14
1568265--1568301	19	1.9	19	94	0	65	35	18	16	29	1.93
1569268--1569317	17	2.9	17	85	5	64	64	4	12	20	1.43
1569300--1569395	36	2.7	35	83	4	120	63	3	9	23	1.39
1570077--1570127	10	5.1	10	83	6	59	3	11	0	84	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1570787--1570878	41	2.2	43	83	9	111	44	6	13	35	1.69
1571416--1571462	20	2.3	20	85	0	58	25	14	19	40	1.90
1576792--1576853	27	2.2	30	86	13	87	22	20	1	54	1.53
1583866--1583938	34	2.1	35	85	7	96	58	12	12	16	1.62
1586539--1586563	13	1.9	13	100	0	50	32	16	16	36	1.90
1586572--1586700	52	2.5	52	90	0	177	37	19	15	27	1.92
1591564--1592315	151	5.0	151	76	7	544	39	19	16	24	1.91
1591691--1592184	150	3.3	149	81	5	532	39	17	16	25	1.91
1593604--1593673	30	2.6	25	75	18	68	2	12	8	75	1.13
1593919--1593969	20	2.5	20	83	0	57	64	3	1	29	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12