genome.fa.s312.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Length:  1822960

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1727697--1727779	43	2.0	41	83	4	103	25	21	21	31	1.98
1727772--1727796	13	1.9	13	100	0	50	36	16	16	32	1.90
1728016--1728047	15	2.1	15	100	0	64	62	12	6	18	1.50
1728123--1728170	22	2.2	22	96	0	87	41	14	25	18	1.88
1728567--1728608	21	2.0	20	86	4	57	76	16	7	0	1.00
1729661--1729706	20	2.2	22	88	7	69	52	2	8	36	1.45
1735394--1735591	89	2.2	89	85	0	252	28	20	16	33	1.95
1735779--1736026	44	5.7	43	72	12	157	20	22	15	41	1.90
1735822--1735986	88	1.9	88	85	2	233	20	22	16	40	1.91
1736560--1737251	84	8.2	84	85	1	823	17	31	19	32	1.95
1736285--1736855	299	1.9	299	83	1	750	18	29	17	34	1.94
1736195--1737251	42	25.0	42	73	7	685	17	30	18	33	1.95
1737230--1737265	16	2.2	16	100	0	72	16	44	13	25	1.85
1737254--1737347	42	2.2	42	88	1	134	18	30	15	35	1.92
1737148--1737331	100	1.8	100	87	4	273	17	33	17	30	1.94
1738302--1738436	35	3.9	35	86	0	162	50	13	20	16	1.78
1738312--1738442	70	1.9	70	88	0	199	48	13	20	16	1.80
1742026--1742868	60	14.0	60	72	9	416	41	10	23	24	1.86
1742124--1742833	30	23.6	30	67	10	155	41	10	22	24	1.86
1742048--1742841	181	4.4	180	73	7	450	41	10	22	24	1.86
1742450--1742507	29	2.0	30	82	3	73	39	10	22	27	1.86
1742191--1742731	121	4.5	121	76	7	411	41	10	22	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1746804--1746877	20	3.7	20	83	7	96	39	12	17	31	1.86
1747604--1747758	46	3.3	46	85	3	195	32	18	27	21	1.97
1747858--1748662	28	27.3	30	81	8	711	24	17	29	28	1.98
1747862--1748669	89	9.1	89	83	4	908	24	18	29	28	1.98
1748447--1748731	28	10.1	28	81	8	202	25	14	30	28	1.95
1750004--1750054	17	2.9	17	80	19	61	5	13	9	70	1.32
1757100--1757169	20	3.5	20	82	7	88	40	11	15	32	1.83
1761407--1761446	21	2.0	20	85	5	53	7	30	2	60	1.38
1761997--1762035	15	2.6	15	95	0	69	69	15	2	12	1.30
1761999--1762042	15	3.0	15	90	3	54	70	15	4	9	1.30
1765037--1765098	25	2.5	25	84	2	72	3	33	14	48	1.60
1766352--1766459	7	14.3	7	72	18	58	19	3	1	75	1.05
1766357--1766435	16	5.3	15	74	18	67	21	1	1	75	0.94
1766357--1766459	25	4.2	24	79	13	86	20	2	1	74	1.04
1767761--1767801	17	2.3	17	87	8	55	43	0	2	53	1.13
1767908--1768309	154	2.6	153	79	5	377	39	19	13	28	1.89
1768117--1768442	152	2.1	152	79	4	352	40	19	14	25	1.89
1768766--1768814	24	2.2	24	85	10	68	57	24	0	18	1.41
1771342--1771387	24	1.9	24	95	0	83	26	23	6	43	1.78
1773847--1773914	28	2.5	28	79	13	79	7	16	1	75	1.10
1774417--1774444	13	2.2	13	100	0	56	28	14	17	39	1.89
1774397--1774462	33	2.0	33	85	5	89	30	13	13	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775127--1775154	13	2.2	13	100	0	56	28	14	17	39	1.89
1775107--1775172	33	2.0	33	85	5	89	30	13	13	42	1.83
1773839--1775259	710	2.0	710	97	0	2709	29	18	15	37	1.91
1779208--1779336	52	2.5	52	94	0	222	30	16	16	37	1.91
1779345--1779369	13	1.9	13	100	0	50	36	16	16	32	1.90
1779412--1779474	19	3.7	18	76	24	73	36	17	12	33	1.88
1779431--1779487	13	3.9	13	76	24	60	33	17	14	35	1.90
1779410--1779489	32	2.5	32	95	0	151	37	16	12	33	1.86
1785724--1785784	10	5.7	10	83	14	77	85	13	0	1	0.68
1785735--1785781	7	6.9	7	77	22	55	85	12	0	2	0.70
1785724--1785784	23	2.8	21	85	11	86	85	13	0	1	0.68
1787095--1787467	30	12.1	30	82	8	383	23	30	15	30	1.95
1787090--1787461	61	6.0	60	80	9	365	23	30	15	30	1.95
1787163--1787427	91	2.9	91	92	1	424	24	30	16	28	1.96
1787408--1787792	61	6.1	62	76	14	160	21	30	12	35	1.90
1787101--1787655	91	6.0	92	78	10	363	23	30	14	32	1.94
1787442--1787495	27	2.0	27	92	0	90	24	31	12	31	1.93
1787421--1787598	95	1.9	95	88	4	270	21	28	11	37	1.89
1787530--1787590	27	2.3	27	79	0	77	26	29	9	34	1.88
1787131--1787785	30	20.8	33	76	12	314	21	30	13	33	1.93
1787465--1787785	66	4.9	66	78	11	349	20	30	11	37	1.89
1787723--1787792	33	2.5	25	67	30	59	22	31	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1787877--1788293	49	8.6	49	75	7	332	24	25	16	33	1.96
1787776--1788286	98	5.4	91	80	7	442	25	25	17	32	1.97
1790747--1790775	10	2.7	11	94	5	51	24	20	0	55	1.44
1794775--1794842	34	2.0	34	91	0	109	55	7	11	25	1.61
1795647--1795718	21	3.5	21	79	11	94	31	25	12	30	1.92
1795624--1795778	20	7.7	20	75	13	131	31	21	12	34	1.90
1800006--1800274	79	3.4	79	78	4	292	27	25	13	34	1.93
1800211--1800327	51	2.3	51	86	0	162	26	27	12	33	1.93
1800129--1800536	130	3.1	130	85	2	523	25	26	14	33	1.94
1800341--1800449	51	2.1	51	84	0	137	25	27	14	32	1.95
1800390--1800729	79	4.3	79	82	4	382	26	23	14	35	1.94
1802433--1802486	22	2.6	21	77	16	58	50	9	1	38	1.45
1802792--1802826	18	1.9	18	88	11	54	37	2	8	51	1.47
1803429--1803483	5	11.0	5	82	7	67	38	0	3	58	1.16
1804053--1804106	20	2.7	20	88	5	74	31	12	20	35	1.90
1804418--1804507	45	2.0	45	95	0	162	25	18	14	41	1.89
1804970--1805091	61	2.0	61	96	0	226	36	8	13	42	1.74
1807005--1807049	2	22.5	2	95	0	81	2	46	0	51	1.13
1807504--1807548	23	2.0	23	82	8	56	48	8	0	42	1.34
1809077--1809123	16	2.9	16	81	15	60	34	6	10	48	1.63
1809125--1809203	39	2.0	39	97	0	149	43	12	8	35	1.74
1809392--1809443	17	3.1	17	83	10	63	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816940--1817003	33	1.9	33	83	0	83	35	10	10	42	1.75
1817530--1817587	21	2.7	21	74	15	55	34	17	17	31	1.93
1817436--1817675	114	2.1	113	82	3	277	32	16	19	32	1.94
1818115--1818163	12	4.3	12	82	10	50	75	0	24	0	0.80
1818115--1818163	11	4.5	11	84	0	62	75	0	24	0	0.80
1820188--1820345	80	2.0	80	85	7	214	32	22	3	40	1.72
1820962--1821088	52	2.4	52	93	0	218	37	19	16	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!