genome.fa.s312.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Length:  1822960

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348890--349129	64	3.8	64	92	4	387	27	36	17	17	1.93
349117--349441	43	7.1	43	82	11	380	25	25	17	30	1.97
349117--349494	92	4.1	92	93	1	621	25	25	17	31	1.97
349117--349717	184	3.0	187	82	12	659	24	25	16	33	1.96
349395--349879	49	8.7	55	74	15	304	23	25	15	36	1.93
349444--349890	116	3.9	116	70	14	368	23	25	14	36	1.93
349346--349883	223	2.4	223	94	1	926	23	25	15	35	1.94
349566--349771	107	2.0	101	83	5	259	22	25	16	35	1.94
349786--349895	49	2.2	49	93	0	184	24	25	15	34	1.95
350583--350607	13	1.9	13	100	0	50	36	16	16	32	1.90
350669--350693	13	1.9	13	100	0	50	32	16	16	36	1.90
356735--356785	19	2.7	19	96	0	93	31	11	17	39	1.86
356838--356862	13	1.9	13	100	0	50	32	16	16	36	1.90
356873--356998	52	2.4	52	93	0	216	36	19	17	26	1.94
362498--362533	12	3.1	12	92	4	56	80	19	0	0	0.71
363815--363919	30	3.5	29	84	8	122	28	31	14	25	1.95
363935--364101	33	5.1	33	88	2	248	28	34	17	19	1.95
363940--364101	65	2.5	66	91	1	263	29	33	18	18	1.95
364115--364653	49	11.7	43	77	12	493	26	24	17	31	1.97
364115--364653	92	5.9	92	91	0	855	26	24	17	31	1.97
365502--365528	14	1.9	14	100	0	54	37	14	14	33	1.88
365565--365618	19	2.7	21	82	5	76	40	12	14	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365647--365701	20	2.8	20	83	5	67	34	14	10	40	1.81
369118--369142	13	1.9	13	100	0	50	36	16	16	32	1.90
369214--369238	13	1.9	13	100	0	50	32	16	16	36	1.90
369247--369375	52	2.5	52	96	0	240	34	17	18	28	1.94
373463--373503	20	2.0	20	100	0	82	14	29	19	36	1.92
375406--376213	34	26.0	33	72	16	222	21	33	12	33	1.91
375572--376111	61	8.9	61	79	11	340	21	34	12	31	1.91
375606--376270	27	22.0	27	73	18	306	22	33	13	30	1.92
375385--375840	120	3.7	120	82	4	475	22	32	12	32	1.91
375632--376243	95	6.6	92	76	14	455	21	33	12	32	1.91
375707--376264	156	3.6	149	83	9	656	21	33	13	31	1.92
376086--376270	60	3.1	60	83	7	200	22	32	15	29	1.94
376186--376270	30	2.9	30	87	8	129	28	32	18	20	1.96
376186--376310	57	2.2	59	82	8	150	33	29	16	20	1.95
376385--376671	39	6.9	39	77	13	277	26	27	20	25	1.99
376337--376580	126	1.9	126	94	1	427	27	26	20	26	1.99
376424--376747	87	3.7	87	92	0	513	26	27	19	26	1.99
377483--377537	20	2.8	20	88	5	76	32	14	12	40	1.84
380134--380158	13	1.9	13	100	0	50	36	16	16	32	1.90
380263--380391	52	2.5	52	96	0	240	34	17	18	28	1.94
387007--387057	13	3.9	13	82	12	61	86	13	0	0	0.58
387000--387058	21	2.7	23	84	15	88	84	15	0	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387627--387683	31	1.9	28	86	10	78	40	19	3	36	1.69
388336--388573	30	7.8	31	84	4	288	23	31	14	31	1.94
388336--388580	94	2.7	91	84	5	348	23	30	14	31	1.95
388581--389371	34	25.5	32	70	16	127	21	33	12	32	1.90
388644--388828	93	2.0	93	81	4	221	22	30	12	33	1.92
388748--389287	61	8.9	61	79	11	356	21	34	12	31	1.91
388473--389016	120	4.5	121	81	6	555	22	32	12	32	1.92
388777--389446	27	22.1	27	72	18	307	21	33	13	31	1.92
388950--389172	95	2.3	95	88	0	338	20	34	10	34	1.87
388877--389440	156	3.7	149	82	9	659	21	33	13	31	1.92
389011--389328	95	3.3	95	78	14	304	20	34	11	33	1.89
389201--389440	95	2.6	86	81	9	237	22	33	15	28	1.94
389262--389446	60	3.1	60	83	7	200	22	33	15	28	1.94
389362--389452	30	3.1	30	87	6	134	30	32	18	17	1.94
389561--389847	39	6.9	39	76	13	268	25	26	21	26	1.99
389600--389931	87	3.8	87	90	0	504	25	25	21	27	1.99
389513--389760	126	2.0	126	96	0	460	25	26	20	27	1.99
390659--390713	20	2.8	20	88	5	76	32	14	12	40	1.84
398727--398844	47	2.5	47	85	0	155	17	20	31	30	1.96
399986--400667	42	16.1	42	81	3	744	37	18	28	15	1.91
410955--411038	19	4.7	19	81	18	108	33	11	17	36	1.87
410995--411019	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410976--411040	32	2.0	32	96	0	121	33	12	16	36	1.87
411056--411188	52	2.6	52	95	0	230	36	18	16	29	1.92
414857--414888	8	3.8	9	92	8	50	81	0	0	18	0.70
415460--415629	82	2.1	82	84	0	214	28	34	20	17	1.94
429594--429650	28	2.0	28	96	0	105	33	24	15	26	1.95
429599--429658	28	2.1	28	84	0	75	43	18	15	23	1.87
430740--430840	42	2.4	42	84	0	121	23	27	17	30	1.97
430767--434483	43	87.5	43	71	12	1353	19	28	16	35	1.93
430772--434195	128	26.9	127	74	9	1237	18	28	16	35	1.93
430728--434271	85	41.7	85	71	10	1058	18	28	16	35	1.93
430772--432051	508	2.5	508	80	4	1346	18	27	17	36	1.93
430736--432569	933	2.0	930	78	5	1903	18	27	17	36	1.93
432690--433918	171	7.2	171	74	11	461	20	28	15	35	1.93
432135--434485	128	18.4	128	75	7	897	19	28	16	35	1.93
435010--435048	9	4.4	9	87	3	53	76	0	0	23	0.78
435031--435079	21	2.4	21	82	3	55	75	2	4	18	1.06
435040--435079	21	1.9	21	89	0	62	75	2	5	17	1.10
435644--435868	81	2.8	82	82	2	283	30	36	17	15	1.91
435653--435906	82	3.1	81	81	2	294	29	37	16	16	1.91
439714--439765	20	2.6	20	90	0	77	32	13	15	38	1.86
439733--439922	52	3.7	51	86	2	238	32	17	10	38	1.84
455921--456051	52	2.5	52	91	0	208	31	16	16	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455921--456071	52	2.9	51	86	3	196	32	16	17	33	1.92
456060--456084	13	1.9	13	100	0	50	36	16	16	32	1.90
456125--456191	33	2.0	33	88	0	98	40	14	11	32	1.83
456147--456171	13	1.9	13	100	0	50	32	16	16	36	1.90
456909--457035	67	1.9	68	81	4	159	37	13	25	23	1.91
457092--457367	43	6.0	43	82	11	300	28	18	26	26	1.98
457048--457367	49	6.8	48	84	8	381	29	18	25	25	1.98
457367--457504	33	4.2	33	91	4	226	21	17	34	26	1.95
457454--458311	105	8.5	105	89	6	1075	33	11	33	20	1.89
457507--458310	34	23.9	34	81	13	840	34	11	33	20	1.89
458027--458212	61	3.0	61	95	1	320	33	12	31	21	1.91
457925--458331	156	2.6	155	90	5	611	32	12	33	21	1.91
458094--458307	95	2.3	95	98	0	410	32	12	33	21	1.91
458189--458331	61	2.3	61	97	0	268	28	13	34	22	1.93
458305--458366	32	1.9	32	86	0	88	29	12	35	22	1.91
458469--458506	16	2.3	17	86	4	51	26	5	23	44	1.74
459632--459669	17	2.3	17	86	4	51	0	0	18	81	0.69
459664--459689	13	2.0	13	100	0	52	7	7	7	76	1.15
459647--459707	31	2.0	29	84	12	79	4	4	14	75	1.14
462255--462295	19	2.1	20	86	4	57	41	14	24	19	1.89
466591--466711	52	2.3	52	94	0	206	30	19	15	34	1.93
466591--466731	52	2.7	51	87	4	194	31	18	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466720--466744	13	1.9	13	100	0	50	36	16	16	32	1.90
466785--466811	13	2.1	13	100	0	54	33	14	14	37	1.88
467883--468009	1	127.0	1	74	0	101	86	12	0	0	0.61
467882--468009	9	13.0	9	83	12	139	85	13	0	0	0.63
467883--468008	11	11.7	11	82	10	131	86	12	0	0	0.61
467882--468009	37	3.2	36	87	12	157	85	13	0	0	0.63
467882--468006	46	2.7	46	85	9	164	85	13	0	0	0.64
469198--469701	28	17.5	28	83	7	555	30	29	17	23	1.97
469235--469759	28	17.8	32	76	13	269	30	28	16	24	1.97
470627--470672	20	2.3	20	88	0	65	34	10	13	41	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12