genome.fa.s312.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold312
Parameters: 2 7 7 80 10 50 1000
Length:  1822960

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1415 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989067--989117	17	3.1	16	80	8	57	84	3	7	3	0.86
989059--989121	24	2.7	23	78	9	74	80	4	9	4	0.99
990256--990459	84	2.4	84	83	1	239	24	22	12	40	1.88
991064--991332	88	3.0	85	82	8	254	29	24	14	30	1.95
991122--991332	88	2.4	88	84	6	257	30	24	14	30	1.95
991849--992001	66	2.2	69	87	7	215	23	26	9	40	1.84
991804--992001	35	5.7	35	79	7	199	24	28	8	38	1.84
991992--992131	48	2.9	48	83	1	165	20	16	18	44	1.87
992181--992428	44	5.6	44	76	8	202	21	22	15	40	1.91
992112--992433	133	2.4	132	83	1	394	21	23	15	39	1.92
992112--992475	132	2.7	131	80	4	390	21	22	16	39	1.92
992795--992976	84	2.2	83	82	4	208	21	28	13	35	1.92
995422--995462	22	2.0	21	86	13	59	41	4	21	31	1.74
996319--996344	13	2.0	13	100	0	52	30	15	15	38	1.88
996435--996459	13	1.9	13	100	0	50	36	16	16	32	1.90
996417--996482	33	2.0	33	93	0	114	36	18	16	28	1.93
997356--997420	33	2.0	33	87	6	96	27	13	16	41	1.87
997376--997401	13	2.0	13	100	0	52	30	15	15	38	1.88
999979--1000015	13	2.8	13	91	0	56	35	18	16	29	1.93
1006192--1006217	13	2.0	13	100	0	52	30	15	15	38	1.88
1006172--1006236	33	2.0	33	87	6	96	27	13	18	40	1.89
1006450--1006773	162	2.0	162	97	0	612	40	13	8	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006852--1006948	13	8.4	13	70	23	74	37	14	16	31	1.89
1006836--1006968	33	4.0	32	94	3	205	36	13	18	31	1.89
1006870--1006968	20	5.7	20	68	30	91	38	13	18	30	1.88
1014952--1015003	19	2.5	22	76	23	67	32	1	40	25	1.67
1015537--1015601	20	3.6	20	67	26	63	27	21	15	35	1.94
1015536--1015616	33	2.5	33	95	0	153	29	19	16	34	1.94
1015599--1015656	19	2.9	19	87	5	80	36	15	17	31	1.91
1021473--1021576	55	1.9	55	93	0	181	45	12	22	20	1.84
1021639--1021704	30	2.3	27	82	17	71	24	0	3	72	0.98
1022250--1022930	42	16.1	42	70	10	250	35	18	27	19	1.95
1022293--1022433	43	3.3	43	77	1	149	34	17	25	22	1.96
1022252--1022495	85	2.9	85	78	3	256	35	16	27	20	1.94
1022505--1022723	85	2.6	83	85	3	287	34	19	26	19	1.96
1022378--1022664	127	2.3	127	76	3	301	36	18	25	18	1.94
1022534--1022734	84	2.4	85	88	0	296	34	19	27	17	1.95
1022604--1022930	126	2.6	126	85	2	444	34	19	28	18	1.95
1024281--1024326	14	3.4	14	81	3	58	8	6	0	84	0.77
1024272--1024325	20	2.7	20	83	8	74	9	7	0	83	0.82
1039540--1039593	1	54.0	1	83	0	54	1	5	3	88	0.67
1039541--1039578	10	3.8	10	90	10	60	0	2	5	92	0.47
1039540--1039578	17	2.4	16	87	8	60	0	2	5	92	0.46
1048237--1048340	55	1.9	55	95	0	190	45	11	20	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048223--1048336	55	2.2	50	85	7	129	44	11	19	24	1.83
1048423--1048494	12	6.5	11	80	13	60	26	0	0	73	0.83
1048405--1048462	21	2.8	20	75	17	55	25	0	1	72	0.94
1048405--1048464	20	2.8	20	74	13	57	28	0	1	70	0.97
1048468--1048494	4	6.8	4	100	0	54	22	0	0	77	0.76
1048405--1048487	43	1.9	44	82	7	107	27	0	1	71	0.94
1050546--1050602	22	2.6	22	94	0	96	28	26	10	35	1.89
1051041--1051127	36	2.6	33	83	7	95	32	12	24	31	1.92
1052723--1052781	21	2.8	21	78	21	70	54	1	23	20	1.54
1054244--1054282	13	3.0	13	84	0	60	35	15	12	35	1.86
1054418--1054452	18	2.0	17	88	5	52	34	17	11	37	1.85
1056167--1056223	22	2.6	22	94	0	105	26	22	12	38	1.89
1060088--1060119	16	2.0	16	100	0	64	31	12	18	37	1.88
1061879--1061903	13	1.9	13	100	0	50	32	16	16	36	1.90
1061968--1062007	13	3.1	13	88	0	62	35	12	15	37	1.85
1062851--1063447	106	5.6	106	81	8	633	33	22	7	37	1.83
1062851--1063447	215	2.8	212	82	6	703	33	22	7	37	1.83
1062866--1063485	321	1.9	320	81	6	754	33	22	8	36	1.84
1064434--1064479	24	1.9	24	82	8	58	54	2	4	39	1.32
1064461--1064504	20	2.2	20	84	8	54	65	4	4	25	1.30
1065454--1065504	23	2.2	23	89	6	77	58	7	7	25	1.53
1065832--1066007	92	1.9	91	95	1	316	34	14	17	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1065831--1066027	92	2.2	90	90	5	315	33	14	18	33	1.91
1065874--1066216	92	3.7	93	79	7	283	34	13	20	32	1.91
1066197--1066385	80	2.3	80	83	6	213	34	12	24	29	1.91
1069842--1069866	13	1.9	13	100	0	50	32	16	20	32	1.94
1070175--1070213	21	1.9	21	89	5	62	30	12	7	48	1.69
1072436--1072473	13	2.9	13	88	0	58	34	13	15	36	1.87
1077861--1078106	97	2.5	97	90	0	386	30	12	28	29	1.93
1080301--1080372	20	3.6	20	77	3	65	40	11	13	34	1.81
1080980--1082108	28	39.5	28	87	6	1370	21	18	32	27	1.97
1083346--1083392	8	5.9	8	82	7	60	0	2	12	85	0.70
1083358--1083396	13	3.0	13	85	11	53	0	0	12	87	0.55
1083325--1083394	10	6.5	10	77	18	61	1	4	11	82	0.86
1083326--1083395	15	4.7	14	75	10	68	1	4	11	82	0.86
1083325--1083396	21	3.3	21	73	13	65	1	4	12	81	0.89
1094393--1094421	10	2.9	10	100	0	58	93	6	0	0	0.36
1095668--1095717	13	3.9	13	75	15	50	34	16	14	36	1.88
1095734--1095974	28	8.2	28	82	5	241	30	31	16	22	1.95
1095734--1095917	84	2.2	84	88	2	269	28	31	16	22	1.96
1095762--1096072	56	5.2	62	79	10	212	31	31	15	21	1.95
1095992--1096068	31	2.5	30	84	14	111	31	28	16	23	1.96
1096138--1096305	91	1.8	91	83	7	225	25	25	18	31	1.97
1096220--1096540	52	5.9	52	74	10	277	23	23	14	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096220--1096596	113	3.4	111	82	5	408	24	22	15	37	1.92
1096475--1096605	61	2.1	61	87	5	185	22	22	13	40	1.90
1097656--1097828	79	2.2	79	88	2	249	31	15	25	27	1.96
1097780--1097855	27	2.8	27	88	6	100	23	19	32	23	1.97
1097839--1097961	51	2.4	51	84	5	158	31	12	23	32	1.91
1100331--1100372	21	2.0	21	95	0	75	28	21	9	40	1.84
1100528--1100559	12	2.6	12	95	5	55	28	0	3	68	1.04
1101195--1101387	55	3.4	55	81	6	199	25	18	26	29	1.98
1101398--1101539	61	2.5	55	86	12	198	23	21	28	26	1.99
1101252--1101977	155	4.7	155	91	1	1099	26	19	28	25	1.98
1101708--1101824	61	1.9	61	89	3	182	25	18	29	26	1.98
1101869--1102095	62	3.8	60	75	12	200	27	19	28	25	1.99
1102012--1102120	55	2.0	55	90	0	173	24	20	26	28	1.99
1102094--1102484	210	1.9	210	94	0	674	27	19	28	25	1.98
1102131--1102326	55	3.5	55	81	5	223	22	21	29	26	1.99
1102247--1104372	155	13.4	155	82	9	2525	26	19	29	25	1.98
1102500--1102804	55	5.3	60	83	9	304	23	21	28	25	1.99
1101401--1104372	637	4.7	633	85	6	3464	26	19	29	24	1.98
1102500--1102804	110	2.6	112	82	9	341	23	21	28	25	1.99
1101249--1104371	792	3.9	761	81	10	2963	26	19	28	25	1.98
1102827--1102943	61	1.9	61	89	3	182	26	19	27	26	1.99
1103137--1103441	55	5.3	58	82	8	285	23	20	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103257--1103453	55	3.6	55	90	0	295	21	21	29	27	1.98
1103137--1103453	110	2.8	112	82	9	356	23	20	29	25	1.99
1103777--1103915	61	2.4	55	83	12	174	23	20	28	28	1.99
1103932--1104230	55	5.2	59	81	10	293	25	21	26	27	1.99
1104256--1104885	60	10.4	60	84	2	747	28	19	26	25	1.99
1104259--1104891	122	5.2	121	86	2	759	28	19	26	25	1.99
1104259--1104886	182	3.4	182	89	1	873	28	19	26	25	1.99
1111040--1111210	79	2.2	79	88	4	256	32	15	24	26	1.95
1111224--1111342	51	2.3	51	82	5	132	33	11	23	31	1.91
1113692--1113732	21	2.0	21	95	0	73	26	21	9	41	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12