genome.fa.s365.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold365
Parameters: 2 7 7 80 10 50 1000
Length:  1826335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1288 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1717578--1717602	13	1.9	13	100	0	50	36	16	16	32	1.90
1717558--1717623	32	2.0	33	94	2	116	34	12	16	36	1.86
1717697--1717821	52	2.4	52	93	0	214	36	16	18	28	1.93
1729958--1730085	61	2.1	60	84	5	159	35	11	28	23	1.90
1730041--1730290	52	4.9	51	72	8	211	32	15	26	26	1.96
1730209--1730314	49	2.3	46	84	9	128	30	16	27	25	1.97
1730337--1730517	32	5.7	31	79	6	202	18	20	30	29	1.97
1730338--1730525	63	2.9	63	81	5	234	20	19	31	28	1.97
1730344--1730517	95	1.8	95	88	4	271	18	18	31	31	1.95
1730699--1730759	28	2.2	27	82	2	77	26	18	29	26	1.98
1732074--1732117	10	4.4	10	83	11	63	0	2	18	79	0.83
1736885--1736937	20	2.6	19	82	14	61	81	1	13	3	0.92
1736887--1736946	28	2.1	28	87	0	84	80	3	13	3	0.97
1736896--1736958	17	3.6	17	77	8	54	79	3	14	3	0.98
1736920--1736996	17	4.4	17	68	25	54	74	2	16	6	1.15
1739358--1739489	31	3.9	34	82	9	164	32	11	26	29	1.91
1740421--1740768	164	2.1	164	82	8	406	47	8	10	32	1.68
1740824--1741322	164	3.0	164	80	9	484	49	10	10	29	1.71
1740438--1741211	386	2.0	383	90	2	1230	49	10	9	30	1.70
1746250--1746275	13	2.0	13	100	0	52	30	15	15	38	1.88
1748824--1748849	13	2.0	13	100	0	52	38	15	15	30	1.88
1752754--1752798	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755017--1755042	13	2.0	13	100	0	52	30	15	15	38	1.88
1756396--1756462	34	2.0	34	100	0	134	43	8	17	29	1.80
1758590--1758649	21	3.0	21	80	4	79	41	15	6	36	1.73
1758635--1758660	13	2.0	13	100	0	52	38	15	15	30	1.88
1759596--1759675	11	7.5	11	78	14	87	2	20	0	77	0.88
1759596--1759684	32	2.8	32	86	6	126	3	20	0	76	0.93
1759596--1759688	9	10.1	9	76	17	77	3	21	0	75	0.95
1759594--1759690	11	9.2	10	76	16	81	3	22	0	74	0.96
1763256--1763384	52	2.5	52	96	0	231	30	17	17	34	1.93
1763256--1763404	52	2.9	51	89	4	219	31	17	17	33	1.93
1767637--1767713	20	3.9	19	80	8	91	32	12	11	42	1.80
1767590--1767761	91	1.9	90	87	1	254	31	15	9	43	1.80
1774089--1774123	10	3.4	11	88	11	56	80	0	0	20	0.72
1774062--1774121	23	2.6	23	82	10	61	78	6	0	15	0.95
1774650--1774690	17	2.4	17	100	0	82	46	12	21	19	1.82
1775959--1776165	79	2.6	79	77	5	195	36	13	23	27	1.92
1776105--1776216	51	2.2	51	82	3	127	33	14	25	27	1.94
1776150--1776591	79	5.6	79	79	6	457	33	13	25	27	1.93
1776148--1776591	158	2.8	158	84	3	547	33	13	25	27	1.93
1779383--1779551	92	1.8	92	82	5	216	31	26	13	27	1.94
1779447--1779767	170	1.9	170	85	3	450	29	27	13	29	1.94
1780284--1780667	70	5.5	70	77	6	323	23	19	11	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780311--1780512	103	1.9	105	84	2	273	23	19	10	46	1.81
1780284--1780646	35	10.4	35	78	4	232	23	19	10	45	1.82
1783454--1783494	20	2.0	20	85	0	55	31	12	14	41	1.83
1783527--1783686	51	3.1	51	87	0	221	28	23	11	36	1.90
1783638--1783921	79	3.6	80	86	3	387	27	23	11	36	1.90
1783571--1784129	288	1.9	288	85	2	764	27	23	13	36	1.92
1783777--1784026	130	1.9	130	83	3	324	27	21	12	38	1.90
1783716--1784130	209	2.0	209	84	4	543	26	22	13	36	1.92
1783859--1783971	51	2.2	51	80	0	127	26	23	12	37	1.91
1783906--1784206	79	3.8	79	78	4	306	25	23	14	35	1.94
1784181--1784237	29	2.0	29	86	6	80	28	36	7	28	1.83
1785259--1785364	46	2.3	46	85	0	140	27	25	7	39	1.82
1786700--1787121	167	2.5	163	78	7	413	31	14	8	46	1.73
1787595--1787641	19	2.3	21	82	10	62	78	0	21	0	0.75
1787597--1787641	20	2.2	20	84	4	54	80	0	20	0	0.72
1788157--1788200	23	1.9	23	81	9	54	40	22	6	29	1.80
1788598--1788651	20	2.7	20	82	0	63	33	16	12	37	1.87
1788678--1788728	20	2.5	20	90	0	75	39	15	13	31	1.87
1788719--1788760	21	2.0	21	95	4	77	19	11	19	50	1.78
1792966--1793336	185	2.0	185	95	0	670	23	22	12	40	1.88
1797645--1797674	13	2.3	13	94	0	51	36	10	16	36	1.82
1797622--1797691	33	2.1	33	89	0	104	35	18	12	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797720--1797771	19	2.7	20	84	3	70	40	15	15	28	1.88
1797761--1797799	20	1.9	21	94	5	71	20	17	20	41	1.91
1799166--1799197	17	1.9	16	93	6	55	84	0	15	0	0.63
1800186--1800227	21	1.9	23	85	9	61	73	0	7	19	1.05
1806382--1806529	47	3.1	47	77	7	147	33	12	18	36	1.88
1809795--1809943	52	2.9	51	87	4	217	31	17	17	33	1.93
1809932--1809956	13	1.9	13	100	0	50	36	16	16	32	1.90
1809997--1810063	33	2.0	33	88	0	98	40	13	11	34	1.81
1810019--1810043	13	1.9	13	100	0	50	32	16	16	36	1.90
1810940--1811119	91	1.9	93	90	5	285	31	16	24	27	1.96
1811027--1811171	49	3.0	49	85	4	195	31	16	25	26	1.96
1810940--1811168	48	4.8	46	80	10	232	31	17	24	26	1.97
1811212--1811316	30	3.6	30	94	2	178	20	18	28	32	1.96
1811388--1811449	27	2.2	28	85	2	90	17	14	35	32	1.90
1811212--1811435	60	3.7	62	76	9	212	25	16	29	28	1.96
1812882--1813024	1	143.0	1	74	0	115	2	1	9	86	0.72
1812882--1813024	47	3.2	43	79	13	144	2	1	9	86	0.72
1812902--1813025	25	5.0	24	78	19	139	2	1	9	86	0.74
1812882--1813025	36	3.9	35	85	12	159	2	1	9	86	0.74
1812884--1813025	11	12.0	11	77	15	133	2	1	9	85	0.75
1812917--1813040	62	2.0	62	80	3	142	4	4	12	79	1.04
1822715--1822741	10	2.7	10	100	0	54	77	22	0	0	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!