genome.fa.s365.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold365
Parameters: 2 7 7 80 10 50 1000
Length:  1826335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1288 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479243--479305	19	3.6	19	76	24	84	34	19	12	33	1.89
479230--479307	32	2.4	32	97	0	147	33	17	14	34	1.90
490384--490423	21	1.9	21	84	0	53	42	20	12	25	1.86
490505--490534	16	1.9	15	93	6	51	0	16	0	83	0.65
490507--490561	13	4.3	13	79	6	60	0	21	0	78	0.76
491018--491333	167	1.9	166	88	3	474	54	9	8	27	1.61
491034--491439	167	2.4	165	81	7	421	53	8	8	29	1.62
493917--493980	19	3.7	19	74	23	77	34	12	15	37	1.85
493918--493988	32	2.2	32	97	0	133	33	12	16	36	1.87
493937--493961	13	1.9	13	100	0	50	36	16	16	32	1.90
494032--494057	13	2.0	13	100	0	52	30	15	15	38	1.88
494012--494078	33	2.0	33	88	0	98	25	14	16	43	1.86
496424--496540	51	2.4	48	84	9	132	29	23	12	33	1.92
496522--496598	27	2.8	27	88	5	102	23	32	19	24	1.97
496664--496831	52	3.3	51	82	4	203	29	27	10	32	1.90
503068--504411	116	11.7	115	88	5	1601	26	28	20	24	1.99
503099--504412	55	22.9	54	86	8	1455	26	28	20	24	1.99
504224--504306	27	3.0	27	61	22	64	30	30	18	21	1.97
505079--505142	19	3.7	19	74	23	77	34	12	14	39	1.83
505082--505144	32	2.0	32	96	0	117	36	12	12	38	1.82
505194--505219	13	2.0	13	100	0	52	30	15	15	38	1.88
507585--507682	51	1.9	51	84	12	130	30	22	11	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507683--507759	27	2.8	28	86	9	106	23	33	16	25	1.96
507825--507994	52	3.3	51	79	8	200	30	27	10	32	1.89
507927--508133	107	1.9	108	82	4	258	26	27	14	31	1.94
512552--512763	108	2.0	108	91	0	343	25	19	13	41	1.88
512763--513514	44	17.1	44	68	11	188	21	22	16	40	1.91
512874--513358	132	3.7	132	79	5	381	21	21	16	40	1.91
512966--513197	88	2.6	86	78	9	218	20	20	17	40	1.91
513012--513343	133	2.5	132	82	2	425	21	22	17	37	1.94
513445--513563	44	2.7	44	79	7	127	21	21	18	37	1.94
513657--513895	82	2.9	81	75	9	234	17	24	14	42	1.87
514881--515420	167	3.2	165	80	5	547	31	9	7	51	1.62
515893--515958	20	3.2	21	78	18	68	74	0	22	3	0.96
515914--515947	11	3.2	11	87	8	52	73	0	26	0	0.83
524009--524049	21	2.0	20	85	4	55	24	21	17	36	1.94
527534--527781	97	2.5	96	79	4	257	28	22	12	36	1.91
541003--541032	15	2.0	15	93	0	51	20	20	30	30	1.97
541062--541089	13	2.2	13	100	0	56	39	17	14	28	1.89
541044--541109	33	2.0	33	88	5	98	40	13	15	30	1.85
549428--549502	20	3.8	20	76	3	71	41	12	12	34	1.79
549425--549502	40	2.0	39	87	2	111	41	12	11	34	1.80
550062--551510	29	50.2	29	85	5	1698	22	17	31	28	1.97
552708--552771	1	64.0	1	79	0	65	0	4	6	89	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552692--552732	20	2.1	19	86	4	55	4	9	2	82	0.89
552697--552772	10	7.8	10	78	8	68	1	5	7	85	0.79
562483--562522	19	2.1	19	85	0	53	70	7	10	12	1.35
565303--565339	18	2.1	18	100	0	74	18	16	37	27	1.92
566628--566702	20	3.8	19	78	7	87	41	12	13	33	1.81
566625--566702	40	2.0	39	89	2	120	41	12	12	33	1.82
568287--568326	13	3.1	13	88	0	53	30	15	12	42	1.83
570850--570876	13	2.1	13	100	0	54	29	14	14	40	1.86
570831--570895	32	2.0	33	90	3	105	29	15	13	41	1.86
570860--570916	19	2.9	19	86	2	78	33	15	15	35	1.90
570946--570983	20	1.9	20	94	0	67	31	10	18	39	1.85
570945--571013	33	2.1	33	86	10	97	33	11	17	37	1.86
574980--575018	20	2.0	19	85	5	51	41	5	23	30	1.76
577522--578224	42	16.6	42	71	9	338	18	27	17	35	1.94
577526--578105	85	6.9	84	77	5	472	18	26	18	36	1.94
577525--578105	127	4.6	125	74	7	390	18	26	18	36	1.94
577611--578121	169	3.0	169	78	4	514	19	26	17	36	1.94
577874--578253	211	1.8	210	82	5	498	18	28	17	35	1.94
587267--587321	20	2.8	20	88	0	83	38	21	5	34	1.77
589379--589415	3	12.3	3	94	0	65	37	0	32	29	1.58
595686--595798	48	2.3	49	78	7	129	54	1	19	23	1.53
596424--596477	20	2.7	20	88	0	81	37	9	14	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596534--596598	32	2.0	32	84	3	85	30	13	12	43	1.81
597745--597769	6	4.2	6	100	0	50	80	0	0	20	0.72
597933--597974	2	21.0	2	95	0	66	0	45	0	54	0.99
601555--601598	19	2.1	22	84	12	58	61	0	0	38	0.96
601926--601984	23	2.4	25	76	21	63	49	5	0	45	1.24
602701--602753	24	2.2	24	86	0	70	41	3	0	54	1.18
609225--609278	20	2.7	20	88	0	81	29	12	11	46	1.77
609262--609291	13	2.3	13	94	0	51	40	16	3	40	1.65
611625--612029	79	5.1	79	85	0	470	29	24	13	33	1.93
616029--616095	21	3.0	21	70	20	55	82	8	4	4	0.95
616020--616084	29	2.2	28	83	5	76	81	9	6	3	0.96
616029--616054	7	3.7	7	100	0	52	88	11	0	0	0.52
616020--616084	14	4.3	15	73	19	55	81	9	6	3	0.96
616019--616095	16	4.6	16	70	17	50	81	9	5	3	0.96
617363--619240	27	63.1	27	69	16	372	22	30	12	34	1.91
617388--617486	34	2.9	35	80	4	114	19	31	10	39	1.85
617332--617757	80	4.9	94	76	12	247	22	33	13	31	1.92
617457--617871	53	7.6	53	77	10	370	23	32	13	31	1.93
617709--617829	51	2.3	51	86	6	163	27	34	10	27	1.90
617563--617926	199	1.8	198	84	5	502	23	31	12	32	1.92
617711--617872	80	2.1	78	82	4	191	25	32	12	30	1.92
617869--618228	34	10.9	34	73	12	153	20	28	11	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617813--620818	61	48.3	66	71	14	580	21	29	12	36	1.90
618207--618502	53	5.3	52	72	16	229	24	30	12	32	1.92
618457--620420	34	62.8	33	73	13	647	21	29	11	36	1.89
618487--618785	66	4.5	66	79	7	255	20	27	11	40	1.87
618457--618787	100	3.3	102	79	9	339	20	27	11	40	1.87
618789--619239	53	8.1	52	73	13	294	21	32	13	32	1.92
618893--620889	34	64.0	32	70	15	665	21	30	12	35	1.90
619254--619731	66	7.1	67	76	8	377	21	28	10	39	1.87
619209--619721	100	5.1	99	78	7	480	21	28	10	39	1.87
619209--619731	201	2.6	202	87	3	723	21	28	10	39	1.87
619254--619551	135	2.2	133	80	4	341	21	29	10	38	1.87
618531--620409	899	2.0	903	83	6	2330	21	29	11	36	1.89
619712--620045	27	11.7	27	73	15	212	23	31	11	33	1.91
619713--619903	26	7.2	26	81	5	204	23	29	13	34	1.92
619741--619897	79	2.0	79	85	5	210	23	29	14	33	1.94
619713--619896	53	3.5	52	83	4	226	22	29	13	33	1.93
619878--619965	35	2.6	34	81	1	104	23	32	13	29	1.93
620000--620051	27	1.9	27	92	0	86	26	30	9	32	1.89
620097--620154	27	2.1	27	83	0	71	22	24	12	41	1.87
619977--620633	95	6.8	95	69	14	281	22	30	11	36	1.89
620252--620376	66	1.9	67	82	11	159	24	32	9	33	1.87
620590--620890	27	10.0	27	66	20	118	22	31	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620494--620676	96	1.9	95	82	3	224	21	31	13	33	1.92
620434--620817	156	2.5	156	97	0	725	22	30	13	33	1.92
620594--620737	60	2.4	60	81	3	164	20	31	13	34	1.92
620896--620975	33	2.5	32	81	2	97	38	25	16	20	1.92
620896--620984	33	2.7	32	81	5	90	35	25	17	20	1.95
620993--621234	49	4.8	49	75	7	200	24	23	18	33	1.97
621097--621417	139	2.3	142	85	3	416	26	23	17	32	1.97
621148--621642	230	2.2	229	88	1	722	26	24	17	31	1.97
621306--621534	91	2.5	91	88	0	316	26	23	17	32	1.96
621578--621680	39	2.6	39	93	0	170	29	28	20	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11