genome.fa.s365.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold365
Parameters: 2 7 7 80 10 50 1000
Length:  1826335

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1288 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292640--293166	167	3.2	166	80	8	373	29	10	7	51	1.64
295079--295766	154	4.5	154	81	4	748	25	16	19	38	1.92
295124--295729	308	2.0	309	86	2	862	25	16	19	38	1.92
297910--297957	16	2.9	17	78	6	53	25	22	12	39	1.89
298829--299067	60	4.1	60	78	4	209	43	13	17	25	1.85
298695--298978	58	4.8	58	76	8	225	42	13	20	23	1.87
299196--299290	46	2.1	43	81	11	102	27	23	14	34	1.94
308636--308665	15	2.0	15	93	0	51	6	6	36	50	1.55
309407--309462	20	2.8	20	89	5	78	32	17	8	41	1.81
311164--312524	682	2.0	683	99	0	2697	40	14	16	28	1.87
314326--314380	19	2.8	20	73	15	60	38	14	14	32	1.87
314366--314390	13	1.9	13	100	0	50	36	16	16	32	1.90
314348--314411	33	2.0	33	90	3	103	37	15	15	31	1.89
320138--320266	52	2.5	52	93	0	222	29	17	17	36	1.92
320352--320414	19	3.9	16	74	21	60	41	15	12	30	1.85
320347--320412	30	2.1	32	91	5	109	39	16	12	31	1.85
320369--320393	13	1.9	13	100	0	50	32	16	16	36	1.90
321033--321179	52	2.8	53	77	9	174	35	15	25	23	1.94
321033--321225	105	1.8	105	80	4	228	34	16	24	24	1.95
321166--321272	52	2.1	52	83	0	133	38	16	22	22	1.93
321571--321743	43	3.7	46	78	10	172	31	18	23	27	1.97
321625--321693	22	3.2	22	63	19	54	31	18	23	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321437--321751	87	3.5	89	79	6	341	31	19	23	26	1.98
321773--321845	28	2.6	27	77	14	76	17	12	34	35	1.88
321874--322231	34	10.6	34	82	9	403	36	12	32	18	1.88
321829--322067	34	7.6	29	75	12	106	33	11	33	21	1.89
321874--322231	131	2.7	132	84	7	456	36	12	32	18	1.88
322203--322261	30	1.9	31	86	3	84	25	20	33	20	1.97
323605--323687	1	83.0	1	78	0	85	0	0	10	89	0.50
323607--323687	7	11.6	7	93	3	128	0	0	11	88	0.50
337523--337651	52	2.5	52	96	0	240	27	17	18	35	1.94
337660--337684	13	1.9	13	100	0	50	36	16	16	32	1.90
337737--337801	19	3.8	18	73	24	68	40	13	12	33	1.82
337732--337799	32	2.1	32	91	5	111	38	14	11	35	1.83
337756--337780	13	1.9	13	100	0	50	32	16	16	36	1.90
338583--338607	13	1.9	13	100	0	50	36	16	16	32	1.90
347720--347758	20	2.0	20	89	0	60	33	12	20	33	1.91
348346--348483	65	2.1	65	82	7	165	36	13	13	35	1.85
350283--350762	79	6.2	78	83	5	510	33	14	24	27	1.94
350257--350762	158	3.2	157	82	5	589	34	14	24	27	1.94
350702--350818	51	2.3	51	86	2	155	33	11	24	29	1.91
350727--350866	51	2.7	51	85	2	174	35	11	25	28	1.90
353210--353238	13	2.2	13	100	0	58	37	13	17	31	1.89
353189--353256	33	2.1	33	94	0	118	39	14	17	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353169--353256	20	4.8	18	72	23	69	39	13	17	29	1.88
355110--355135	3	8.7	3	100	0	52	34	0	34	30	1.58
355589--355637	21	2.3	20	83	10	62	67	0	20	12	1.22
355603--355649	21	2.2	21	92	0	76	57	0	19	23	1.41
363039--363064	13	2.0	13	100	0	52	38	15	15	30	1.88
363018--363084	33	2.0	33	88	0	98	43	16	14	25	1.86
363104--363171	19	3.9	18	76	23	83	38	14	11	35	1.83
363126--363150	13	1.9	13	100	0	50	32	16	16	36	1.90
363107--363169	32	2.0	32	96	0	117	36	15	12	34	1.86
363609--363687	31	2.5	31	78	19	83	34	18	1	45	1.58
365924--365962	22	1.9	20	85	15	53	38	10	7	43	1.67
372232--372325	45	2.0	46	93	4	163	36	13	12	37	1.84
373171--373227	30	1.9	30	82	7	71	59	0	0	40	0.97
374365--374415	21	2.5	20	78	12	59	74	0	1	23	0.92
374365--374415	11	4.8	11	80	7	61	74	0	1	23	0.92
374449--374513	25	2.5	26	87	9	89	52	1	0	46	1.10
375154--375185	2	16.0	2	100	0	64	50	0	0	50	1.00
376303--376369	3	23.3	3	73	14	61	34	0	0	65	0.93
377154--377198	24	1.9	23	86	4	63	53	0	0	46	1.00
379777--379801	2	12.5	2	100	0	50	52	48	0	0	1.00
384856--385028	90	1.9	91	85	7	244	43	16	12	26	1.84
388429--388455	3	9.0	3	100	0	54	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388653--388686	17	2.0	17	94	0	59	38	5	2	52	1.41
389519--389865	173	2.0	173	87	1	498	48	5	11	34	1.63
390555--390584	2	15.0	2	100	0	60	50	0	0	50	1.00
395599--395694	20	4.7	21	82	7	110	34	12	18	34	1.89
395619--395701	41	2.0	41	92	0	139	33	9	22	33	1.87
396078--396105	11	2.5	11	100	0	56	0	10	0	89	0.49
396703--396737	17	2.1	17	94	0	61	40	22	8	28	1.84
398786--398828	22	2.0	23	90	9	72	46	6	9	37	1.63
398930--398977	19	2.5	19	86	3	60	31	16	14	37	1.89
411018--411045	2	14.0	2	100	0	56	50	0	0	50	1.00
413583--413681	37	2.7	38	78	12	100	43	2	0	54	1.11
413618--413691	34	2.2	34	82	4	87	41	2	0	55	1.14
416183--416207	13	1.9	13	100	0	50	32	16	16	36	1.90
416195--416245	20	2.5	21	87	3	68	39	13	17	29	1.88
416280--416330	20	2.6	20	90	3	77	39	17	13	29	1.88
417889--417919	9	3.4	9	95	0	53	38	0	35	25	1.56
420500--420552	26	2.0	26	100	0	106	30	16	18	33	1.94
422259--422284	8	3.2	8	100	0	52	15	0	23	61	1.33
422489--422524	13	2.8	13	91	0	54	36	19	11	33	1.87
422656--422696	22	2.0	21	86	13	59	31	21	4	41	1.74
424933--424957	13	1.9	13	100	0	50	32	16	16	36	1.90
424945--424995	20	2.5	21	87	3	68	39	13	17	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426973--427032	19	3.1	19	74	11	59	61	3	8	26	1.40
434505--434579	20	3.8	19	78	7	87	41	12	13	33	1.81
434502--434579	40	2.0	39	89	2	120	41	12	12	33	1.82
440365--440411	24	1.9	25	86	4	69	76	8	8	6	1.15
442337--442914	36	16.2	36	72	9	346	33	20	11	34	1.89
442500--442849	146	2.4	144	79	6	354	33	21	10	34	1.88
443379--443477	50	2.0	50	87	0	144	34	22	19	24	1.96
443584--443846	51	5.2	51	79	6	257	33	20	22	23	1.98
443584--443858	102	2.7	102	80	3	286	33	20	21	24	1.97
443584--443897	51	6.2	51	77	5	235	33	21	21	23	1.97
444091--444473	115	3.3	115	79	5	402	38	8	8	44	1.66
454298--454631	165	2.0	165	98	0	641	31	15	15	36	1.90
455262--455286	13	1.9	13	100	0	50	52	16	8	24	1.70
456822--457369	166	3.3	165	80	3	539	31	10	7	50	1.66
456963--457397	165	2.6	163	80	4	467	31	9	7	51	1.62
457501--457570	16	4.2	17	80	10	74	31	0	1	67	1.00
457507--457570	18	3.0	21	78	21	64	29	0	0	70	0.88
457507--457567	23	2.8	22	80	16	65	29	0	0	70	0.88
461952--461991	18	2.2	18	100	0	80	22	30	32	15	1.94
462983--463128	39	3.5	39	74	15	148	27	20	25	26	1.99
462934--463193	87	3.0	87	93	0	430	28	18	25	27	1.98
463022--463176	48	3.4	47	73	15	164	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463202--463703	28	17.8	28	81	8	479	22	17	26	32	1.97
463240--463711	169	2.8	169	87	3	623	23	17	27	32	1.96
464070--464154	37	2.3	37	95	0	152	43	11	15	29	1.82
464892--464926	19	1.9	19	88	11	56	51	8	20	20	1.73
465188--465249	1	62.0	1	77	0	52	0	1	11	87	0.62
465179--465249	17	4.1	17	84	15	92	0	1	12	85	0.65
465179--465250	10	6.9	10	77	14	74	0	1	13	84	0.68
465179--465250	13	5.5	13	76	12	67	0	1	13	84	0.68
465179--465246	32	2.2	31	86	7	93	0	1	13	85	0.67
479229--479286	13	4.0	13	74	23	53	32	17	15	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11