genome.fa.s50.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold50
Parameters: 2 7 7 80 10 50 1000
Length:  2541760

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  11  of  16  ( 1865 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1763352--1763422	22	3.0	23	83	12	90	0	2	11	85	0.69
1771017--1771114	32	3.2	29	81	13	99	28	17	20	33	1.95
1771028--1771117	32	2.8	32	96	0	162	26	18	20	34	1.96
1771073--1771188	52	2.2	52	87	3	162	30	18	18	33	1.94
1771177--1771201	13	1.9	13	100	0	50	36	16	16	32	1.90
1771244--1771328	19	4.7	19	75	18	83	38	16	10	34	1.83
1771263--1771326	32	2.0	32	90	3	101	35	17	10	35	1.85
1779536--1779609	28	2.6	28	89	0	112	22	20	33	22	1.97
1779457--1779660	107	1.9	107	84	2	275	31	15	26	26	1.96
1779595--1779713	51	2.3	51	86	2	168	32	13	25	28	1.93
1779799--1779912	51	2.3	51	83	4	133	31	12	25	30	1.92
1779832--1779964	51	2.6	51	78	4	126	34	12	24	28	1.92
1787207--1787231	13	1.9	13	100	0	50	32	16	16	36	1.90
1787240--1787368	52	2.5	52	90	0	204	37	17	17	27	1.92
1791489--1791569	1	81.0	1	71	0	54	85	8	6	0	0.75
1791492--1791555	9	6.9	9	77	12	67	84	10	4	0	0.76
1791489--1791569	33	2.4	32	82	15	94	85	8	6	0	0.75
1791492--1791555	19	3.4	19	76	8	69	84	10	4	0	0.76
1791489--1791568	43	1.9	42	87	10	119	85	8	6	0	0.76
1792609--1792694	27	3.1	27	63	3	73	26	24	20	27	1.99
1792532--1792900	55	6.4	57	88	5	475	27	26	20	25	1.99
1792532--1792899	121	3.2	113	87	7	512	27	26	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792938--1793167	61	3.8	61	83	4	288	25	28	19	26	1.99
1792698--1793112	215	1.9	217	84	7	565	25	27	20	26	1.99
1792920--1793167	122	2.1	115	85	6	327	25	27	20	26	1.99
1792643--1793167	276	1.9	276	85	4	738	25	27	20	27	1.99
1794006--1794059	19	2.7	21	82	8	67	35	11	18	35	1.86
1794111--1794135	13	1.9	13	100	0	50	32	16	16	36	1.90
1796474--1796713	52	4.6	51	81	5	268	31	25	10	32	1.89
1796723--1796895	79	2.2	80	83	5	217	28	23	16	31	1.96
1796930--1797003	28	2.6	28	87	4	96	22	29	20	27	1.98
1796596--1797220	237	2.6	238	78	7	581	27	24	13	34	1.93
1803367--1803869	116	4.2	117	85	5	622	25	28	20	26	1.99
1803399--1804137	177	4.3	172	78	11	691	25	27	20	26	1.99
1803373--1803869	61	8.3	61	85	7	621	25	28	20	25	1.99
1803910--1804151	61	4.1	60	84	9	271	25	24	20	29	1.99
1803675--1804085	216	1.9	216	92	2	691	25	27	19	27	1.99
1805915--1806159	79	3.1	77	82	9	273	31	14	26	27	1.95
1805950--1806188	79	3.0	78	83	8	281	33	13	25	28	1.93
1806041--1806206	79	2.1	79	89	0	251	31	15	27	26	1.95
1806143--1806379	51	4.6	52	78	5	232	31	12	26	29	1.93
1808662--1808705	20	2.1	21	87	4	63	38	13	18	29	1.89
1808752--1808803	13	3.5	13	73	26	50	36	17	13	32	1.89
1808760--1808845	19	4.7	19	72	20	76	34	16	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1808752--1808824	32	2.3	32	97	0	137	35	17	12	34	1.88
1813339--1813400	16	3.8	16	77	10	54	79	8	11	1	1.01
1814683--1814764	27	3.0	27	66	15	69	28	30	19	21	1.98
1814462--1815066	55	10.5	59	81	9	600	26	27	20	25	1.99
1815076--1815333	61	4.4	58	83	9	317	25	27	21	25	1.99
1814800--1815606	276	2.9	275	88	2	1122	25	27	19	27	1.99
1814855--1815269	215	1.9	217	84	8	558	24	27	20	26	1.99
1815155--1815544	215	1.8	215	83	6	529	26	26	18	28	1.98
1815373--1815607	61	3.9	61	80	5	246	27	25	18	28	1.98
1815638--1815726	42	2.1	42	81	4	99	16	23	15	43	1.87
1816368--1816645	132	2.1	132	100	0	556	37	15	15	31	1.89
1816635--1816684	20	2.5	20	96	0	91	24	18	18	40	1.91
1820504--1820529	13	2.0	13	100	0	52	38	15	15	30	1.88
1820516--1820573	21	2.8	21	100	0	116	37	17	10	34	1.84
1820590--1820667	32	2.4	32	91	0	120	32	17	15	34	1.92
1820622--1820646	13	1.9	13	100	0	50	32	16	16	36	1.90
1820603--1820662	19	3.5	18	72	25	58	33	18	13	35	1.89
1821478--1821563	28	3.1	28	64	20	72	23	23	29	24	1.99
1821458--1821917	61	7.8	61	83	9	552	25	20	26	26	1.99
1821450--1821938	116	4.2	110	79	15	488	25	20	26	26	1.99
1821455--1821917	177	2.6	177	94	1	804	25	20	26	26	1.99
1821959--1822514	61	9.4	59	84	7	577	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1822129--1822216	28	3.3	26	64	25	65	26	20	27	26	1.99
1821688--1822209	271	1.9	271	92	2	870	26	20	26	25	1.99
1821961--1822482	116	4.5	112	80	10	527	25	21	27	25	1.99
1824934--1824986	19	2.7	20	88	5	81	35	11	16	35	1.85
1825029--1825053	13	1.9	13	100	0	50	32	16	16	36	1.90
1833684--1833832	52	2.9	51	88	4	226	30	17	18	33	1.94
1833886--1833952	33	2.0	33	88	0	98	40	13	11	34	1.81
1833908--1833932	13	1.9	13	100	0	50	32	16	16	36	1.90
1834830--1835057	48	4.8	47	79	11	243	31	17	24	26	1.97
1834830--1835057	97	2.4	92	85	7	289	31	17	24	26	1.97
1835100--1835418	30	10.7	30	81	8	305	25	16	28	29	1.97
1836856--1836976	1	121.0	1	77	0	116	0	0	9	88	0.60
1836859--1836974	28	4.2	29	82	15	147	0	0	10	87	0.62
1836856--1836976	38	3.1	37	85	11	163	0	0	9	88	0.60
1836856--1836973	21	5.7	20	85	5	146	0	0	10	88	0.61
1850695--1850770	32	2.4	32	95	0	134	26	22	18	32	1.97
1853400--1853472	1	73.0	1	73	0	56	86	10	2	0	0.68
1853400--1853461	7	9.4	7	80	15	62	87	11	1	0	0.62
1853402--1853472	20	3.5	19	79	12	79	85	11	2	0	0.69
1853400--1853461	28	2.1	28	88	5	88	87	11	1	0	0.62
1853418--1853461	7	6.3	7	87	10	63	88	11	0	0	0.51
1854546--1855079	55	9.4	54	79	9	498	27	26	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1854880--1855715	215	3.9	213	72	17	679	25	27	19	28	1.99
1854835--1855487	276	2.4	276	85	5	846	25	26	19	27	1.99
1855126--1855351	122	1.9	121	87	6	332	26	27	19	26	1.99
1855122--1855367	61	4.1	60	82	9	293	25	27	19	28	1.98
1855247--1855640	153	2.6	153	86	3	540	25	27	19	27	1.99
1854987--1855778	429	1.8	431	90	1	1286	25	26	19	28	1.99
1855572--1855778	61	3.4	61	80	7	251	26	25	20	28	1.99
1855534--1855783	61	4.2	59	77	10	226	27	25	20	26	1.99
1855531--1855783	122	2.1	115	85	6	328	27	25	20	26	1.99
1855767--1855904	42	3.2	42	79	7	127	18	27	13	39	1.89
1855800--1855904	42	2.5	41	84	4	129	17	25	13	43	1.85
1857374--1857591	51	4.3	49	77	7	197	34	12	23	29	1.91
1857374--1857591	99	2.2	101	82	4	253	34	12	23	29	1.91
1857545--1857746	76	2.6	75	82	8	219	34	13	24	28	1.93
1857682--1857859	51	3.5	50	81	5	189	34	12	25	28	1.92
1861000--1861053	21	2.7	20	77	8	65	38	14	12	33	1.85
1863761--1863786	13	2.0	13	100	0	52	38	15	15	30	1.88
1863818--1863869	21	2.6	21	90	6	81	34	15	11	38	1.83
1864646--1864950	55	5.5	55	81	10	325	22	21	27	27	1.99
1864617--1864949	170	2.0	166	81	8	384	23	21	27	27	1.99
1864585--1864950	110	3.2	112	83	7	375	24	21	26	27	1.99
1864970--1865295	61	5.5	60	84	7	400	24	21	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864761--1865146	215	1.8	209	84	5	524	25	21	29	24	1.99
1865208--1865295	26	3.3	26	65	20	72	21	19	30	28	1.97
1864718--1865513	336	2.4	333	88	4	1148	25	20	29	25	1.99
1864970--1865265	121	2.4	121	93	1	495	25	21	28	24	1.99
1865091--1865482	215	1.8	215	94	2	707	24	19	29	25	1.99
1865306--1865516	61	3.5	61	85	5	293	25	20	28	25	1.99
1873480--1873547	19	3.9	18	76	23	83	38	14	11	35	1.83
1873502--1873526	13	1.9	13	100	0	50	32	16	16	36	1.90
1873483--1873545	32	2.0	32	96	0	117	36	15	12	34	1.86
1873603--1873659	21	2.7	21	97	0	105	36	19	10	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16