genome.fa.s50.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold50
Parameters: 2 7 7 80 10 50 1000
Length:  2541760

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1865 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2477593--2477719	24	4.9	24	69	17	85	59	1	0	38	1.07
2477685--2477747	20	3.3	18	75	20	65	61	1	1	34	1.15
2477623--2477722	19	5.3	19	65	15	64	58	2	0	40	1.10
2477599--2477747	81	1.9	81	87	10	229	59	2	0	38	1.14
2477672--2477763	24	3.9	24	72	11	73	61	1	1	35	1.10
2480941--2481002	30	2.1	30	84	6	81	27	24	14	33	1.94
2481330--2481386	21	2.8	21	86	2	80	35	15	15	33	1.90
2481371--2481397	13	2.1	13	100	0	54	40	14	14	29	1.86
2481462--2481486	13	1.9	13	100	0	50	36	16	16	32	1.90
2481606--2481648	22	2.0	22	86	9	61	37	9	6	46	1.63
2483898--2483996	39	2.5	39	81	12	123	46	7	2	44	1.42
2483898--2484023	39	3.3	39	72	16	100	43	7	2	46	1.43
2484927--2484964	3	12.7	3	94	0	67	28	0	2	68	1.03
2485071--2485121	19	2.7	19	90	3	77	23	0	1	74	0.92
2485075--2485141	29	2.3	29	82	7	84	25	1	2	70	1.10
2485051--2485130	35	2.2	38	82	8	103	27	0	2	70	1.01
2485075--2485132	18	3.2	17	76	11	53	24	0	1	74	0.92
2487401--2488097	51	13.7	51	72	11	231	24	16	20	38	1.93
2488739--2488821	43	2.0	42	88	7	123	30	9	18	42	1.82
2489098--2489125	12	2.3	12	100	0	56	46	7	17	28	1.75
2489721--2491140	407	3.5	405	87	3	1991	38	15	10	35	1.82
2490502--2491770	635	2.0	639	90	1	2010	39	15	10	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2491139--2491936	406	2.0	405	88	1	1197	38	16	10	33	1.84
2492040--2492333	161	1.8	160	89	2	464	34	15	14	35	1.89
2493735--2493784	25	2.0	25	88	3	75	26	24	4	46	1.70
2496371--2496405	1	35.0	1	88	0	52	0	94	2	2	0.37
2497173--2497211	19	2.0	20	90	5	62	87	7	0	5	0.68
2509026--2509070	5	9.0	5	90	0	72	44	0	55	0	0.99
2509026--2509070	15	3.0	15	96	0	81	44	0	55	0	0.99
2510833--2510905	31	2.4	31	88	0	101	24	24	6	43	1.78
2510851--2510909	31	1.9	31	100	0	118	23	30	3	42	1.71
2513300--2513340	3	13.7	3	94	0	73	36	0	34	29	1.58
2513646--2513683	20	1.9	20	94	0	67	31	13	10	44	1.77
2513654--2513769	51	2.3	51	90	3	180	25	15	15	43	1.86
2516370--2516395	13	2.0	13	100	0	52	38	15	15	30	1.88
2521027--2521173	51	2.9	51	88	4	224	31	17	18	32	1.94
2521985--2522417	49	8.8	52	81	9	361	31	17	25	25	1.97
2522049--2522417	49	7.7	49	83	8	467	30	18	25	26	1.98
2522040--2522422	92	4.1	92	86	6	525	31	17	25	25	1.97
2522422--2522486	33	1.9	34	96	3	123	15	20	36	27	1.92
2522471--2523511	71	15.7	67	82	10	831	33	12	33	20	1.90
2522491--2523486	34	30.0	35	76	16	674	33	12	33	20	1.90
2522600--2522653	27	2.0	27	88	0	81	24	14	38	22	1.91
2523027--2523079	27	2.0	26	92	3	88	20	16	37	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2522491--2523393	242	3.8	238	84	9	1057	33	12	33	20	1.90
2523123--2523511	62	6.1	61	86	8	410	33	12	31	21	1.91
2524453--2524485	11	3.0	11	95	0	57	3	0	6	90	0.52
2531748--2531894	51	2.9	51	88	4	224	31	17	18	32	1.94
2532869--2532913	21	2.1	21	84	8	56	53	4	20	22	1.63
2534718--2534754	15	2.4	16	82	17	51	51	18	16	13	1.76
2537138--2537386	24	10.8	24	74	23	95	3	14	41	40	1.63
2537326--2540637	29	116.1	28	70	22	765	4	14	40	40	1.66
2537136--2537459	18	18.1	18	68	25	101	3	14	41	40	1.61
2537545--2537606	19	3.0	20	79	11	72	8	11	40	40	1.70
2536094--2541081	7	687.7	7	77	16	3510	4	11	43	40	1.61
2537769--2540637	29	96.9	30	73	17	1282	4	14	40	40	1.65
2540824--2541078	38	6.6	37	78	16	193	3	14	41	40	1.61
2540952--2540986	17	2.1	17	88	0	52	0	14	40	45	1.45
2540955--2541017	25	2.6	24	80	14	58	3	17	41	38	1.65
2541135--2541207	18	4.2	17	86	10	85	2	16	36	43	1.62
2541132--2541194	9	7.5	8	78	16	65	1	17	41	39	1.59
2541143--2541207	9	7.3	9	75	14	55	3	15	36	44	1.62
2540838--2541194	7	43.4	8	72	21	108	4	15	40	39	1.68
2541220--2541292	30	2.4	30	82	10	87	2	15	38	43	1.61
2541382--2541412	16	1.9	16	100	0	62	3	0	51	45	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!