genome.fa.s75.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold75
Parameters: 2 7 7 80 10 50 1000
Length:  1998514

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1375 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1893131--1893179	14	3.6	14	77	2	55	4	16	0	79	0.88
1900790--1901019	116	2.0	116	88	0	343	27	20	24	27	1.99
1911027--1911061	18	1.9	18	88	0	52	65	14	8	11	1.46
1917470--1917507	19	2.1	19	85	5	51	60	5	2	31	1.33
1918530--1918563	2	17.0	2	100	0	68	0	50	0	50	1.00
1918772--1918818	23	1.9	26	83	12	64	48	2	4	44	1.34
1919157--1919183	2	13.5	2	100	0	54	48	0	0	51	1.00
1927459--1927506	22	2.1	23	88	11	73	52	16	14	16	1.76
1930206--1930239	16	2.1	16	100	0	68	38	17	5	38	1.74
1938032--1938075	16	2.8	16	83	13	63	50	13	6	29	1.68
1940303--1940375	30	2.5	31	88	6	107	49	1	8	41	1.41
1942871--1942898	2	14.0	2	100	0	56	50	0	0	50	1.00
1946036--1946069	18	1.9	18	88	5	52	26	17	5	50	1.69
1946238--1946293	13	4.4	12	77	16	51	69	0	0	30	0.89
1947031--1947065	17	2.1	17	88	0	52	42	0	2	54	1.15
1947825--1947850	2	13.0	2	100	0	52	50	0	0	50	1.00
1953001--1953050	2	25.5	2	95	4	93	50	0	0	50	1.00
1952976--1953049	31	2.3	33	83	4	89	47	2	2	47	1.30
1957018--1957048	2	15.5	2	100	0	62	51	0	0	48	1.00
1960024--1960080	26	2.2	27	81	9	73	47	0	0	52	1.00
1966580--1966643	26	2.6	25	81	15	80	25	0	4	70	1.06
1966584--1966634	26	1.9	27	92	4	86	27	0	3	68	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1967344--1967399	15	3.5	15	80	7	58	32	0	0	67	0.91
1967338--1967380	23	1.9	23	85	4	61	25	0	0	74	0.82
1967708--1967734	2	13.5	2	100	0	54	48	0	0	51	1.00
1971022--1971077	22	2.6	21	77	13	60	39	0	1	58	1.08
1972441--1972469	2	14.5	2	100	0	58	48	0	0	51	1.00
1974547--1974731	34	5.5	34	87	3	257	40	26	7	25	1.82
1978797--1978859	19	3.3	19	90	0	90	34	19	17	28	1.94
1979163--1979345	34	5.4	34	87	3	253	39	26	7	25	1.83
1983567--1983613	18	2.6	19	80	10	62	74	2	0	23	0.93
1983562--1983622	13	4.6	14	76	19	58	72	1	1	24	1.03
1983796--1983850	21	2.5	20	83	13	65	74	9	12	3	1.18
1984115--1984147	13	2.6	13	85	4	50	66	15	9	9	1.43
1990634--1990956	89	3.6	86	74	8	263	28	24	15	31	1.96
1991106--1991644	47	11.5	47	79	3	500	22	20	17	39	1.92
1991134--1991644	187	2.7	186	80	5	539	22	20	17	40	1.91
1991199--1991634	234	1.9	234	83	1	579	22	20	16	40	1.91
1991665--1993164	42	35.6	43	70	7	470	18	26	17	38	1.92
1991746--1992234	127	3.9	128	76	7	340	19	26	16	37	1.92
1991974--1993164	169	7.1	169	73	6	797	17	25	17	38	1.92
1992341--1992863	253	2.1	254	85	3	698	17	25	18	38	1.92
1991713--1992708	211	4.7	209	76	6	762	18	26	17	37	1.93
1991673--1993127	126	11.5	126	73	7	652	18	26	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1993365--1993403	1	39.0	1	92	0	51	92	0	2	5	0.46
1993362--1993399	19	2.0	19	100	0	76	84	0	5	10	0.77
1993408--1993464	21	2.7	21	97	0	105	33	10	19	36	1.86
1993520--1993587	19	3.9	19	78	21	85	35	10	14	39	1.80
1993522--1993582	32	1.9	32	96	0	113	34	9	16	39	1.82
1993627--1993652	13	2.0	13	100	0	52	30	15	15	38	1.88
1993607--1993673	33	2.0	33	88	0	98	25	14	16	43	1.86
1996129--1996298	52	3.3	50	77	11	173	30	24	12	33	1.92
1996282--1996358	28	2.8	28	87	0	100	23	33	19	23	1.97
1996392--1996445	28	1.9	28	88	7	83	24	27	16	31	1.96
1996312--1996513	76	2.6	78	81	5	223	25	30	16	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!