genome.fa.s75.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold75
Parameters: 2 7 7 80 10 50 1000
Length:  1998514

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1375 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964359--964543	49	3.7	50	84	5	223	24	23	18	33	1.97
967714--967738	13	1.9	13	100	0	50	36	16	16	32	1.90
967781--967878	19	5.8	18	71	28	90	36	17	12	33	1.87
967800--967856	13	3.9	13	76	24	60	33	17	14	35	1.90
967779--967876	32	3.0	32	96	1	178	35	17	12	34	1.87
968154--968300	52	2.8	50	75	4	141	23	26	18	31	1.97
968255--968336	43	1.9	43	87	0	119	26	24	17	31	1.97
970636--970688	23	2.5	22	88	11	83	67	7	7	16	1.38
971625--971697	20	3.5	20	75	17	69	36	13	12	36	1.83
972172--973855	28	59.4	29	86	4	1477	23	16	32	26	1.96
973307--973843	27	19.7	27	91	1	858	28	14	34	23	1.93
972704--973843	57	20.3	54	87	4	833	24	16	33	25	1.95
972784--973855	137	7.6	136	87	4	917	25	15	33	25	1.95
981320--981375	22	2.6	22	94	5	98	64	8	8	17	1.48
982289--982359	20	3.5	20	78	0	70	39	12	12	35	1.82
983279--983410	20	6.3	20	71	13	79	72	7	0	18	1.12
983326--983376	17	3.1	17	88	8	70	74	5	0	19	1.02
983279--983377	41	2.5	39	73	12	96	73	6	1	19	1.09
983326--983396	17	4.2	17	77	16	60	71	7	0	21	1.09
983346--983408	19	3.4	17	77	14	54	73	9	0	17	1.09
983547--983671	58	2.1	59	91	1	198	47	15	25	12	1.79
985775--986058	79	3.6	79	82	1	320	27	23	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987208--987232	13	1.9	13	100	0	50	72	0	20	8	1.10
988082--988115	17	2.1	16	94	5	59	35	0	0	64	0.94
990991--991015	2	12.5	2	100	0	50	48	0	0	52	1.00
997687--997720	3	11.3	3	100	0	68	35	0	0	64	0.94
998865--998896	2	16.0	2	100	0	64	50	0	0	50	1.00
1008814--1008858	22	2.0	23	91	4	74	20	15	11	53	1.72
1013136--1013165	14	2.1	15	93	6	53	50	0	46	3	1.18
1013343--1013407	2	33.0	2	84	3	87	47	0	3	49	1.17
1014639--1014668	12	2.4	13	94	5	53	0	20	0	80	0.72
1014648--1014677	16	1.9	15	93	6	51	0	16	0	83	0.65
1016465--1016500	16	2.3	16	95	4	65	25	5	11	58	1.54
1016545--1016574	2	15.0	2	100	0	60	50	0	0	50	1.00
1016818--1016859	20	2.0	22	86	13	63	33	2	0	64	1.07
1016919--1016964	23	2.0	22	91	4	74	45	0	0	54	0.99
1017230--1017262	13	2.4	14	85	10	50	33	0	3	63	1.10
1018635--1018697	28	2.3	28	78	10	67	39	1	4	53	1.31
1022050--1022087	2	19.0	2	100	0	76	50	0	0	50	1.00
1023168--1023200	11	2.9	12	91	8	52	48	0	0	51	1.00
1031710--1031863	84	1.8	84	83	5	204	32	21	11	35	1.88
1031795--1032006	86	2.4	86	85	3	273	31	24	13	30	1.94
1033746--1033789	23	1.9	23	86	9	63	40	22	6	29	1.80
1034186--1034240	20	2.8	20	91	0	83	34	21	10	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1034318--1034354	13	2.8	13	91	0	65	40	8	13	37	1.74
1034385--1034540	71	2.2	71	96	0	276	29	17	12	40	1.86
1037036--1037073	20	1.9	20	89	10	60	76	0	23	0	0.79
1037036--1037074	14	2.7	15	76	8	53	76	0	23	0	0.78
1038271--1038303	16	2.1	16	88	5	50	21	3	0	75	0.93
1038602--1038640	17	2.3	17	86	0	51	7	5	5	82	0.96
1039907--1039942	15	2.3	16	90	4	56	58	0	0	41	0.98
1040770--1040923	73	2.1	76	81	6	181	42	8	3	44	1.53
1041361--1041425	6	10.7	6	74	21	55	49	1	1	47	1.20
1041357--1041394	12	2.9	14	81	18	55	44	0	0	55	0.99
1041371--1041423	23	2.5	20	77	16	61	49	1	1	47	1.23
1041739--1041781	19	2.4	17	84	11	50	30	0	0	69	0.88
1043179--1043227	22	2.2	22	96	0	89	34	8	20	36	1.82
1049059--1049099	3	13.7	3	84	0	55	0	39	0	60	0.96
1049059--1049099	12	3.4	12	89	0	64	0	39	0	60	0.96
1049114--1049143	4	7.5	4	100	0	60	23	23	26	26	2.00
1050894--1050961	35	2.0	35	85	8	95	47	0	0	52	1.00
1053537--1053581	18	2.6	17	82	6	56	44	0	0	55	0.99
1055859--1055945	21	4.2	21	69	17	65	41	0	1	57	1.06
1055868--1055905	13	2.8	13	81	18	51	34	0	0	65	0.93
1055867--1055932	34	1.9	35	84	9	91	37	0	1	60	1.06
1055892--1055945	28	1.9	28	88	7	83	42	0	1	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057619--1057650	15	2.1	15	94	0	55	59	0	9	31	1.29
1057622--1057654	10	3.3	10	95	0	57	60	0	12	27	1.32
1060774--1060818	23	1.9	24	81	4	56	37	0	0	62	0.96
1061889--1062097	103	2.0	103	88	1	312	32	14	24	27	1.95
1066918--1066985	33	2.1	32	86	2	91	33	14	16	35	1.89
1066941--1066965	13	1.9	13	100	0	50	36	16	16	32	1.90
1067636--1067679	21	2.0	21	82	4	52	29	31	2	36	1.70
1067705--1067742	19	2.0	19	94	0	67	21	34	0	44	1.52
1069126--1069177	20	2.4	21	84	12	70	3	26	50	19	1.65
1069614--1069652	13	3.0	13	92	0	69	33	15	20	30	1.94
1069853--1069878	8	3.2	8	100	0	52	61	23	0	15	1.33
1075818--1075843	13	2.0	13	100	0	52	38	15	15	30	1.88
1075876--1075926	20	2.5	20	90	0	75	31	15	13	39	1.87
1075914--1075938	13	1.9	13	100	0	50	36	16	16	32	1.90
1076363--1076387	13	1.9	13	100	0	50	36	8	0	56	1.29
1079546--1079600	20	2.8	20	97	0	101	34	14	18	32	1.91
1079645--1079697	13	4.5	13	73	26	64	32	13	16	37	1.88
1079629--1079697	33	2.1	33	91	5	113	30	13	18	37	1.89
1081927--1081961	11	3.4	11	92	7	56	28	0	0	71	0.86
1083358--1083418	19	3.6	17	75	25	58	34	13	14	37	1.85
1083375--1083399	13	1.9	13	100	0	50	36	16	16	32	1.90
1083358--1083425	32	2.1	32	94	0	118	33	13	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1083471--1083498	13	2.2	13	100	0	56	28	14	17	39	1.89
1089110--1089139	16	1.9	15	93	6	51	53	3	16	26	1.59
1089630--1089673	10	4.1	11	83	16	65	38	0	0	61	0.96
1089968--1090025	19	3.1	19	77	18	59	67	0	0	32	0.91
1089968--1090008	21	2.1	18	86	13	55	63	0	0	36	0.95
1090042--1090104	16	3.9	16	78	0	72	42	33	14	9	1.78
1090040--1090134	32	3.0	32	80	0	100	41	30	16	11	1.84
1092198--1092223	13	2.0	13	100	0	52	38	15	15	30	1.88
1092178--1092243	33	2.0	33	88	5	98	30	22	13	33	1.93
1092272--1092327	19	2.9	19	83	2	76	33	12	21	32	1.91
1097885--1098170	156	1.8	156	80	5	346	27	11	18	41	1.85
1097866--1098184	156	2.1	155	77	5	331	26	12	18	41	1.87
1103582--1103653	19	3.7	19	78	17	76	37	16	15	30	1.90
1103684--1103711	13	2.2	13	100	0	56	28	14	17	39	1.89
1107948--1108021	20	3.7	19	78	7	76	33	14	13	37	1.86
1112198--1112239	21	2.0	21	85	0	57	11	9	7	71	1.31
1116678--1116878	52	3.9	52	94	1	332	29	17	18	33	1.94
1116867--1116891	13	1.9	13	100	0	50	36	16	16	32	1.90
1116954--1116978	13	1.9	13	100	0	50	32	16	16	36	1.90
1117036--1117077	21	2.0	21	90	0	66	35	14	14	35	1.86
1125399--1125458	18	3.2	18	84	15	70	86	8	1	3	0.74
1125399--1125460	23	3.1	19	84	11	70	85	8	1	4	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1125399--1125447	1	49.0	1	79	0	53	89	6	0	4	0.57
1125399--1125448	23	2.2	23	96	3	93	88	8	0	4	0.64
1126644--1128083	28	50.5	28	83	9	1518	27	30	18	22	1.98
1126644--1128055	115	12.4	113	85	6	1617	27	30	19	22	1.98
1128692--1128766	20	3.8	20	78	0	78	33	12	13	41	1.81
1128692--1128769	40	2.0	39	84	2	102	33	11	14	41	1.81
1131962--1132090	52	2.5	52	96	0	240	29	18	17	34	1.94
1132099--1132123	13	1.9	13	100	0	50	36	16	16	32	1.90
1132168--1132219	13	3.5	13	73	26	50	36	17	13	32	1.89
1132176--1132240	19	3.7	19	75	23	79	38	16	12	32	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12