genome.fa.s75.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold75
Parameters: 2 7 7 80 10 50 1000
Length:  1998514

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1375 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362731--362758	13	2.2	13	100	0	56	28	14	17	39	1.89
367821--368555	32	24.4	31	76	10	290	23	17	28	31	1.97
367804--368610	64	13.4	58	78	10	442	23	17	27	30	1.97
367857--368610	28	25.2	28	78	9	544	23	17	28	31	1.97
368023--368615	246	2.5	240	88	4	886	22	18	28	31	1.97
367857--368610	182	4.2	175	80	9	727	23	17	28	31	1.97
368622--368722	27	3.7	27	89	0	157	26	14	32	25	1.95
377019--377091	31	2.4	31	100	0	146	41	13	20	24	1.89
377075--377151	20	3.8	20	84	6	111	38	11	16	32	1.85
380106--380293	101	1.9	101	83	6	247	31	14	26	27	1.95
385987--386036	20	2.4	21	76	6	57	38	12	8	42	1.71
388413--388756	79	4.4	79	83	3	390	28	24	13	34	1.93
388688--388819	68	1.9	68	85	0	183	28	23	9	37	1.87
388815--388876	29	2.1	30	93	3	108	25	32	11	30	1.91
388760--388957	108	1.8	108	86	2	290	28	26	10	34	1.90
388888--389002	51	2.3	50	80	3	131	28	26	10	34	1.89
392368--392433	16	3.9	16	75	15	62	53	1	1	43	1.19
392369--392434	18	3.8	18	75	13	59	51	1	1	45	1.19
392908--392963	28	2.0	28	85	0	76	46	3	1	48	1.30
394642--394685	3	14.7	3	95	0	79	31	0	2	65	1.05
396638--397410	316	2.4	316	86	2	1063	23	25	18	32	1.97
403297--403424	52	2.5	52	97	0	238	28	18	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403433--403457	13	1.9	13	100	0	50	36	16	16	32	1.90
403500--403597	19	5.8	18	71	28	90	36	17	12	33	1.87
403519--403575	13	3.9	13	76	24	60	33	17	14	35	1.90
403498--403595	32	3.0	32	96	1	178	35	17	12	34	1.87
409653--409699	22	2.1	22	88	0	67	21	10	10	57	1.62
411217--411249	13	2.6	13	90	4	50	36	0	3	60	1.12
411695--411727	2	16.5	2	100	0	66	48	0	0	51	1.00
413239--413300	32	2.0	31	87	3	88	48	12	14	24	1.79
416903--416967	33	2.0	32	85	8	87	20	21	24	33	1.97
417885--417910	4	6.5	4	100	0	52	0	23	0	76	0.78
418327--418369	22	2.0	22	90	9	70	39	0	0	60	0.97
424043--424074	15	2.1	16	94	5	57	68	0	0	31	0.90
425262--425405	30	4.8	30	76	11	116	45	13	8	33	1.73
425382--425690	142	2.1	144	85	4	426	42	17	8	31	1.79
425563--425718	30	5.3	29	75	12	131	43	17	8	29	1.80
425474--425718	59	4.2	58	71	7	183	42	18	8	30	1.80
425780--426063	139	2.0	142	83	4	362	43	14	7	34	1.73
428748--428772	13	1.9	13	100	0	50	36	16	16	32	1.90
428728--428793	32	2.0	33	94	2	116	33	12	18	36	1.88
428867--428995	52	2.5	52	92	0	213	35	17	17	28	1.93
432891--432937	24	2.0	24	95	0	85	38	46	2	12	1.54
437279--437337	10	5.7	10	73	15	57	25	27	8	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437388--437430	22	2.0	22	100	0	86	27	23	13	34	1.93
439464--439628	84	2.0	84	83	4	208	53	3	17	24	1.59
442699--442723	13	1.9	13	100	0	50	36	16	16	32	1.90
442766--442894	52	2.5	52	97	0	240	35	17	18	27	1.94
449799--449844	12	3.6	13	85	11	60	76	13	6	4	1.14
449824--449859	15	2.4	14	86	13	54	83	13	2	0	0.76
449821--449862	20	2.2	19	86	4	57	80	16	2	0	0.81
451301--451410	27	3.8	27	76	17	114	22	38	14	24	1.92
451136--451677	66	8.3	64	80	10	509	19	34	13	31	1.91
451394--451677	100	2.8	100	90	2	462	19	34	13	32	1.90
451662--452263	33	18.5	33	85	5	719	27	33	18	20	1.96
451681--452275	65	9.2	64	87	4	788	27	33	18	20	1.96
452268--452754	49	10.1	49	83	7	593	24	25	18	32	1.97
452268--452754	92	5.0	94	88	5	563	24	25	18	32	1.97
452495--452754	101	2.6	101	96	0	475	22	25	18	34	1.96
453511--453639	52	2.5	52	97	0	240	34	17	18	28	1.94
456830--456873	21	2.1	21	83	8	54	43	9	11	36	1.72
456956--456980	13	1.9	13	100	0	50	32	16	16	36	1.90
457382--457448	37	1.9	35	88	11	102	32	11	25	29	1.92
458173--458529	183	2.0	183	98	1	689	27	13	25	33	1.93
459601--459655	24	2.3	24	96	0	101	20	23	9	47	1.78
461404--461441	19	2.0	20	84	5	51	13	13	13	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461660--461697	14	2.6	15	83	8	51	65	0	0	34	0.93
461672--461701	14	2.2	14	94	5	53	60	0	0	40	0.97
464210--464251	21	2.0	21	85	0	57	33	4	26	35	1.77
467360--467404	19	2.4	19	84	0	54	37	2	0	60	1.09
467373--467409	19	1.9	19	94	0	65	35	2	0	62	1.10
467573--467654	24	3.2	24	71	20	67	59	0	2	37	1.11
467596--467708	8	12.9	8	68	24	52	60	0	0	38	1.03
467606--467701	20	4.8	18	70	27	61	59	0	0	40	0.97
467630--467711	22	4.0	20	76	12	69	60	0	0	39	0.96
469129--469186	16	3.6	16	78	0	53	43	6	3	46	1.47
481264--481314	24	2.3	23	83	10	70	58	1	0	39	1.09
482223--482407	92	2.0	92	94	0	325	45	12	15	26	1.82
482371--482453	43	1.9	43	95	0	148	32	10	18	38	1.85
482438--482471	2	17.0	2	100	0	68	50	0	0	50	1.00
487368--487416	26	1.9	25	83	4	62	18	2	14	65	1.37
489141--489214	21	3.6	20	80	7	69	37	8	18	35	1.81
492341--492377	2	18.5	2	88	0	56	51	5	0	43	1.24
492748--492777	9	3.2	9	95	4	51	0	13	0	86	0.57
492768--492805	20	1.9	20	94	0	67	5	21	0	73	1.02
494051--494588	32	16.8	32	92	0	853	17	18	33	31	1.94
494571--495745	27	43.1	27	92	1	1902	28	14	34	22	1.93
494571--495745	82	14.4	81	91	2	1902	28	14	34	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497049--497123	36	2.1	36	85	7	100	6	12	9	72	1.29
503500--503529	9	3.2	9	95	4	51	0	13	0	86	0.57
506542--506618	19	3.9	19	76	11	75	29	16	10	42	1.82
508947--509155	79	2.6	79	84	3	251	28	22	11	37	1.89
509090--509257	51	3.3	51	82	4	196	27	26	11	35	1.90
509189--509373	79	2.3	80	81	7	209	25	23	13	36	1.92
512339--512366	13	2.2	13	100	0	56	28	14	17	39	1.89
520665--520823	33	5.1	31	84	7	153	22	33	15	28	1.94
520764--520986	35	6.6	35	80	12	236	22	33	13	30	1.92
520828--520952	63	2.0	62	89	6	189	22	33	12	32	1.91
520761--521003	98	2.4	97	85	9	301	23	33	12	30	1.92
521085--521152	21	3.2	21	63	19	50	25	26	17	30	1.97
521017--521780	43	16.1	48	81	10	753	23	25	18	32	1.97
521022--521770	92	7.9	94	87	7	810	23	25	18	31	1.98
521427--521770	102	3.4	102	97	0	634	21	25	19	33	1.97
522454--522518	19	3.8	18	75	24	77	32	12	16	38	1.86
522456--522526	32	2.2	32	97	0	133	32	12	18	36	1.88
522475--522499	13	1.9	13	100	0	50	36	16	16	32	1.90
522571--522598	13	2.2	13	100	0	56	28	14	17	39	1.89
528719--528755	17	2.2	17	100	0	74	51	5	16	27	1.66
530911--530964	19	2.8	20	82	2	65	38	18	14	27	1.90
531569--531629	20	3.0	20	80	2	77	34	11	11	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539684--539737	19	2.8	20	82	2	65	38	18	14	27	1.90
540341--540401	20	3.0	20	80	2	77	34	11	11	42	1.77
552585--552638	20	2.7	19	86	11	65	33	20	14	31	1.93
552667--552720	19	2.8	20	85	2	74	37	14	16	31	1.89
554248--554289	21	2.2	20	83	12	52	45	4	9	40	1.58
555177--555208	16	2.0	16	93	0	55	46	12	0	40	1.42
557230--557266	19	1.9	19	88	0	56	35	8	13	43	1.74
559166--559210	3	15.0	3	95	0	72	66	28	0	4	1.11
559209--559235	3	9.0	3	100	0	54	66	0	0	33	0.92
560438--560476	20	2.0	20	85	5	53	61	5	10	23	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12