genome.fa.s89.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold89
Parameters: 2 7 7 80 10 50 1000
Length:  5168001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  26  of  27  ( 3236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4637666--4637740	25	3.0	24	81	12	80	53	0	0	46	1.00
4640012--4640047	18	1.9	19	88	5	56	33	2	8	55	1.44
4640251--4640289	10	3.8	10	86	3	51	82	0	17	0	0.68
4640564--4640728	47	3.5	46	72	11	147	65	1	13	20	1.33
4640661--4640907	60	4.3	59	81	9	269	65	1	10	21	1.31
4640818--4641111	100	2.9	100	81	11	323	63	2	12	21	1.40
4640818--4641111	103	2.9	97	80	13	317	63	2	12	21	1.40
4640924--4641321	160	2.5	157	82	6	464	62	1	15	19	1.41
4641189--4641226	15	2.4	16	86	4	51	68	0	10	21	1.19
4641387--4641464	38	2.1	37	85	2	102	69	3	14	12	1.33
4645819--4645885	31	2.2	32	81	10	77	35	0	11	52	1.39
4646908--4646960	5	11.2	5	80	11	51	50	0	0	49	1.00
4647209--4647250	15	3.0	14	76	10	50	52	2	0	45	1.13
4647373--4647445	13	5.6	13	71	16	62	57	0	1	41	1.07
4647390--4647452	28	2.3	29	76	20	73	53	0	0	46	1.00
4647376--4647456	26	3.3	24	76	11	58	55	0	1	43	1.07
4647405--4647446	15	2.9	15	79	6	52	52	0	0	47	1.00
4647550--4647604	27	2.0	28	89	3	85	58	0	3	38	1.16
4647468--4648044	201	2.9	200	89	2	840	37	7	10	44	1.66
4647944--4648023	27	2.9	28	83	7	92	53	0	5	41	1.22
4648006--4648140	31	4.0	31	72	18	110	54	1	0	44	1.09
4648038--4648143	25	4.4	25	70	20	73	54	1	0	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4648016--4648185	71	2.4	71	91	3	274	55	1	0	42	1.12
4648046--4648182	22	6.3	21	70	21	79	55	1	0	42	1.14
4651541--4651573	13	2.4	14	90	5	50	75	0	6	18	1.00
4656454--4656512	2	29.5	2	100	0	118	50	0	49	0	1.00
4659891--4659917	14	1.9	14	100	0	54	7	92	0	0	0.38
4664332--4664366	2	18.0	2	94	5	63	48	0	0	51	1.00
4664893--4664956	28	2.2	30	83	5	78	56	1	9	32	1.41
4665050--4665078	2	14.5	2	100	0	58	51	0	0	48	1.00
4668042--4668264	111	2.0	111	99	0	437	26	21	29	22	1.99
4673937--4674019	41	2.0	41	90	0	130	49	9	2	38	1.49
4674741--4674784	2	22.0	2	100	0	88	50	0	0	50	1.00
4674801--4674826	3	8.7	3	100	0	52	69	0	0	30	0.89
4675702--4675751	24	2.0	25	84	3	66	26	10	4	60	1.47
4676655--4676689	3	11.7	3	100	0	70	34	0	0	65	0.93
4678055--4678088	2	17.0	2	93	0	59	47	0	0	52	1.00
4688141--4688209	21	3.3	21	76	8	77	33	11	34	20	1.89
4691773--4691803	2	15.5	2	93	0	53	48	3	0	48	1.17
4692003--4692031	4	7.5	4	92	7	51	27	0	0	72	0.85
4692621--4692673	2	26.5	2	100	0	106	0	49	0	50	1.00
4700138--4700179	17	2.5	17	88	0	57	50	2	0	47	1.14
4700128--4700173	6	7.8	6	82	4	58	52	2	2	43	1.25
4700896--4700940	18	2.4	20	85	10	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4710954--4710980	14	1.9	14	100	0	54	59	0	14	25	1.36
4715833--4715893	30	1.9	32	83	9	81	60	4	26	8	1.45
4715874--4715904	11	2.8	11	95	0	53	58	0	32	9	1.31
4720729--4720789	30	1.9	32	83	9	81	60	4	26	8	1.45
4720770--4720800	11	2.8	11	95	0	53	58	0	32	9	1.31
4723520--4724210	36	20.2	36	74	12	562	11	33	22	32	1.90
4723547--4724314	66	11.4	67	78	8	524	11	32	22	33	1.90
4723520--4724314	102	7.8	103	75	13	496	11	32	22	32	1.90
4723520--4724210	66	10.1	72	79	7	562	11	33	22	32	1.90
4724014--4724068	20	3.0	20	71	15	55	5	40	21	32	1.76
4724263--4724389	30	4.2	30	72	12	91	13	29	21	36	1.91
4729615--4729692	30	2.6	30	84	6	106	57	0	2	39	1.12
4729615--4729701	29	3.0	28	79	12	81	58	1	2	37	1.18
4730905--4730949	2	22.5	2	86	0	54	48	6	2	42	1.41
4732864--4732895	16	2.0	16	100	0	64	50	0	0	50	1.00
4733040--4733066	12	2.2	12	100	0	54	85	0	7	7	0.75
4733527--4733561	12	2.8	13	86	8	54	77	0	0	22	0.78
4735366--4735414	4	12.2	4	95	0	71	24	0	6	69	1.11
4735421--4735495	16	4.7	15	82	9	78	73	0	24	2	0.96
4735419--4735468	20	2.5	20	83	0	64	76	0	22	2	0.89
4735421--4735484	33	2.0	33	87	6	96	76	0	21	1	0.87
4736272--4736328	26	2.2	26	83	0	69	50	5	5	38	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4736273--4736337	26	2.5	26	73	14	62	50	6	6	36	1.52
4739346--4739438	48	1.9	48	86	4	134	27	21	12	37	1.90
4741676--4741720	4	11.2	4	95	0	54	24	0	8	66	1.20
4741676--4741719	12	3.7	12	84	0	61	25	0	9	65	1.21
4741736--4741775	21	1.9	21	89	0	62	80	0	17	2	0.83
4741727--4741791	34	2.0	34	87	6	98	76	0	21	1	0.86
4741725--4741787	9	7.6	9	74	15	55	74	0	23	1	0.90
4741725--4741802	16	4.8	16	78	10	77	73	0	24	2	0.96
4745675--4745884	57	3.7	57	86	0	276	31	20	14	32	1.93
4747042--4747082	19	2.3	17	87	8	55	21	0	0	78	0.76
4750235--4750312	3	25.7	3	87	7	113	0	34	1	64	1.02
4752293--4752329	3	12.7	3	88	5	58	67	2	0	29	1.04
4753739--4753780	21	2.0	21	90	0	66	45	16	19	19	1.86
4754250--4754670	213	2.0	213	90	1	657	28	24	15	31	1.95
4755014--4755122	57	1.9	57	94	0	191	31	28	15	24	1.96
4754924--4755535	324	1.9	323	84	4	829	35	21	15	26	1.94
4761583--4761612	15	2.0	15	93	0	51	33	23	13	30	1.93
4763047--4763112	30	2.2	30	91	0	105	21	12	40	25	1.88
4776239--4776291	27	2.0	27	84	0	70	56	1	3	37	1.28
4776672--4776724	21	2.6	21	77	17	58	45	0	0	54	0.99
4786409--4786446	20	1.9	20	94	0	67	63	0	0	36	0.95
4789971--4790010	2	20.0	2	89	0	62	47	2	2	47	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4790274--4790299	3	8.7	3	100	0	52	69	0	0	30	0.89
4797042--4797066	2	12.5	2	100	0	50	48	0	0	52	1.00
4797660--4797702	13	3.3	13	84	9	52	74	0	0	25	0.82
4798235--4798263	14	2.1	14	93	6	51	37	0	0	62	0.96
4804873--4804903	2	15.5	2	100	0	62	48	0	0	51	1.00
4805014--4805054	3	13.7	3	100	0	82	34	0	0	65	0.93
4813440--4813499	31	1.9	31	86	3	84	45	11	18	25	1.83
4817715--4817748	17	2.0	17	100	0	68	29	17	17	35	1.93
4823212--4823268	22	2.8	20	81	7	69	40	1	0	57	1.09
4823221--4823268	20	2.5	19	83	12	62	41	2	0	56	1.11
4824392--4824452	2	30.5	2	100	0	122	50	0	0	49	1.00
4826188--4826224	3	12.3	3	100	0	74	64	0	35	0	0.94
4826873--4826897	2	12.5	2	100	0	50	48	0	0	52	1.00
4827362--4827422	31	2.0	31	84	12	81	29	0	6	63	1.19
4827441--4827500	27	2.2	28	82	8	70	51	0	1	46	1.10
4827659--4827687	14	2.1	14	93	6	51	51	0	0	48	1.00
4829755--4829787	3	11.3	3	93	6	59	66	0	33	0	0.92
4834761--4834792	7	4.6	7	100	0	64	43	0	0	56	0.99
4838504--4838530	14	1.9	14	100	0	54	22	0	3	74	0.98
4838501--4838532	17	1.9	17	93	6	57	21	0	3	75	0.95
4838968--4839000	16	2.0	17	88	5	50	27	12	36	24	1.91
4846756--4846788	2	17.0	2	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4851558--4851592	3	11.7	3	100	0	70	68	0	0	31	0.90
4854295--4854369	20	3.8	20	78	0	87	34	13	12	40	1.81
4854295--4854372	40	2.0	39	87	2	111	34	12	12	39	1.82
4858633--4858659	4	6.8	4	100	0	54	22	0	0	77	0.76
4868386--4868440	12	4.8	12	84	8	78	87	12	0	0	0.55
4868389--4868440	22	2.4	22	93	6	88	88	11	0	0	0.52
4868387--4868447	22	2.9	20	81	13	77	88	9	1	0	0.58
4868386--4868459	22	3.5	20	77	17	69	85	10	2	1	0.77
4868387--4868447	1	61.0	1	76	0	59	88	9	1	0	0.58
4869679--4870646	32	32.2	30	90	5	894	29	32	17	19	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27