genome.fa.s89.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold89
Parameters: 2 7 7 80 10 50 1000
Length:  5168001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  7  of  27  ( 3236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871305--871368	26	2.7	24	75	13	60	46	0	3	50	1.17
872036--872064	14	2.1	14	93	6	51	41	0	6	51	1.28
875019--875091	20	3.7	20	74	17	64	45	1	1	52	1.18
875058--875091	11	3.2	11	91	4	52	50	0	0	50	1.00
875081--875130	20	2.5	20	87	9	66	30	0	0	70	0.88
875074--875124	17	3.1	16	80	11	59	31	0	0	68	0.90
875363--875396	16	2.1	16	88	0	50	32	0	0	67	0.91
876023--876090	13	5.1	13	74	13	66	69	0	1	29	0.98
876371--876400	13	2.3	13	94	0	51	50	6	0	43	1.28
877501--877645	72	2.0	72	100	0	290	24	9	9	55	1.62
879150--879493	179	1.9	181	80	9	398	34	14	14	36	1.87
880733--880800	30	2.3	31	85	10	97	42	0	1	55	1.08
880754--880830	38	2.0	38	82	12	95	40	2	1	55	1.22
882320--882381	20	3.0	20	76	23	58	53	3	3	40	1.33
882783--882809	2	13.5	2	100	0	54	51	0	48	0	1.00
883106--883145	18	2.2	19	86	13	57	25	0	0	75	0.81
883087--883156	26	2.7	26	82	8	88	28	0	1	70	0.96
883119--883178	18	3.3	18	76	4	57	33	0	0	66	0.92
883111--883171	26	2.4	24	74	12	59	29	0	0	70	0.88
884051--884108	21	2.6	22	72	22	59	34	10	0	55	1.34
884212--884253	13	3.2	13	81	15	50	64	0	0	35	0.94
884179--884253	16	4.9	16	68	22	63	60	1	1	37	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
890525--890559	18	1.9	18	88	0	52	48	0	0	51	1.00
897242--897310	16	4.1	16	74	20	61	46	0	1	52	1.09
901938--901997	31	1.9	31	96	0	111	28	6	23	41	1.79
903011--903050	2	20.0	2	100	0	80	50	0	50	0	1.00
907443--907500	27	2.0	31	83	12	79	51	3	3	41	1.35
907443--907508	27	2.4	28	82	5	73	51	4	4	39	1.43
908317--908350	17	1.9	17	88	5	50	47	2	0	50	1.16
914910--914936	3	9.0	3	100	0	54	33	0	33	33	1.58
917097--917153	10	6.3	10	73	22	54	49	15	1	33	1.55
917101--917155	16	3.6	16	87	7	78	49	14	1	34	1.54
917178--917217	10	4.2	10	84	12	57	37	0	12	50	1.41
917178--917217	18	2.2	18	95	0	71	37	0	12	50	1.41
920690--920736	19	2.6	18	78	15	53	51	2	0	46	1.13
920758--920795	9	3.9	10	83	16	53	71	2	0	26	1.00
921761--921838	31	2.5	29	78	15	75	48	0	3	47	1.20
921786--921854	31	2.1	31	84	10	84	43	1	7	47	1.39
922418--922462	2	22.5	2	100	0	90	51	0	0	48	1.00
924105--924140	2	18.0	2	94	0	63	50	2	0	47	1.15
925039--925080	18	2.3	18	87	0	66	38	2	0	59	1.10
925502--925543	12	3.1	13	83	16	50	38	0	0	61	0.96
926531--926572	17	2.5	17	84	0	57	35	0	0	64	0.94
927142--927167	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927516--927566	26	2.0	27	88	7	79	50	1	5	41	1.37
930819--930852	2	17.5	2	93	6	61	50	0	0	50	1.00
930820--930849	15	2.0	15	100	0	60	46	0	0	53	1.00
930819--930851	17	1.9	17	100	0	66	48	0	0	51	1.00
930819--930858	21	1.9	21	94	0	71	47	2	0	50	1.14
932701--932735	2	17.5	2	100	0	70	51	0	48	0	1.00
936156--936190	18	1.9	18	94	0	61	31	0	0	68	0.90
936186--936241	25	2.2	24	78	9	58	53	1	0	44	1.11
936211--936244	15	2.3	15	94	0	59	50	0	0	50	1.00
936391--936431	19	2.2	19	86	8	57	43	2	0	53	1.13
936730--936868	8	16.9	8	65	24	58	43	1	0	54	1.09
936740--936873	32	4.2	33	83	8	168	44	1	0	53	1.09
936740--936854	17	7.4	14	72	19	77	46	1	0	52	1.11
936811--936901	40	2.3	39	78	12	96	41	0	0	58	0.98
936722--936897	8	21.6	8	64	25	50	43	1	0	55	1.07
937166--937203	12	3.0	13	85	14	53	44	0	0	55	0.99
942161--942539	188	2.0	189	99	0	751	29	13	18	37	1.89
944725--944756	2	16.0	2	100	0	64	50	0	0	50	1.00
947790--947948	50	3.2	50	88	5	223	31	17	20	30	1.95
952334--952479	50	2.9	50	86	4	213	32	19	20	28	1.97
955816--955861	23	2.0	23	87	8	67	30	8	6	54	1.56
957772--957819	20	2.5	19	80	12	53	52	6	0	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958252--958293	22	1.9	22	90	0	66	52	0	0	47	1.00
958290--958343	26	2.1	26	82	0	63	51	0	0	48	1.00
964074--964099	6	4.3	6	100	0	52	34	15	34	15	1.89
965088--965143	18	3.0	18	78	14	60	35	0	0	64	0.94
965082--965136	27	2.0	27	82	0	65	41	0	0	58	0.98
965094--965144	18	2.7	19	84	6	68	33	0	0	66	0.92
965255--965319	29	2.2	29	83	0	85	29	3	0	67	1.05
969685--969729	11	4.1	11	83	11	65	40	0	0	60	0.97
969678--969748	28	2.4	29	84	11	92	39	0	1	59	1.06
969691--969790	44	2.2	44	80	15	107	39	2	0	59	1.09
970107--970147	3	13.7	3	100	0	82	34	0	0	65	0.93
971422--971462	19	2.2	19	90	0	64	36	12	14	36	1.84
971515--971539	13	1.9	13	100	0	50	32	16	16	36	1.90
972476--972514	20	2.0	20	84	0	51	23	15	12	48	1.79
976172--976223	22	2.3	24	83	12	74	57	0	0	42	0.98
976183--976232	22	2.2	22	82	10	57	58	0	2	40	1.10
976291--976375	24	3.4	24	78	16	93	40	0	0	60	0.97
976374--976425	22	2.4	22	90	6	79	69	0	0	30	0.89
976677--976727	23	2.1	26	85	10	72	39	0	1	58	1.09
976993--977035	21	2.0	22	86	13	63	69	0	0	30	0.88
981144--981182	20	1.9	21	84	5	53	64	2	0	33	1.08
981167--981225	24	2.5	23	75	24	61	57	3	1	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
981277--981312	13	2.6	15	79	20	51	44	5	0	50	1.25
981362--981394	9	3.7	9	88	11	50	42	0	0	57	0.98
981304--981394	25	3.5	26	73	11	73	45	0	0	54	0.99
981430--981462	13	2.5	13	90	9	50	60	3	0	36	1.12
986000--986037	2	19.0	2	100	0	76	50	0	0	50	1.00
986777--986841	34	1.9	34	100	0	130	56	4	20	18	1.58
988802--988967	51	3.3	50	84	1	217	36	0	12	51	1.44
988925--989083	50	3.2	50	76	7	162	29	11	18	39	1.87
993668--993976	50	6.2	50	83	2	352	30	15	19	34	1.93
993668--993975	100	3.1	100	86	0	420	30	15	19	34	1.94
994384--994425	21	2.0	21	86	13	59	71	4	0	23	1.05
996371--996414	23	1.9	23	90	9	72	36	0	0	63	0.95
996235--996555	121	2.7	121	90	2	468	44	4	4	45	1.45
996495--996549	24	2.4	23	80	14	60	38	0	1	60	1.08
996878--996907	14	2.1	14	93	0	51	50	0	0	50	1.00
1000207--1000244	20	1.9	20	100	0	76	63	10	7	18	1.50
1002832--1002866	2	17.5	2	100	0	70	48	0	0	51	1.00
1006394--1006441	2	24.0	2	100	0	96	0	50	0	50	1.00
1007843--1007886	20	2.1	21	87	4	63	54	4	0	40	1.21
1010723--1010831	8	13.2	8	71	22	75	43	0	0	55	1.05
1010756--1010805	20	2.5	19	81	12	57	46	0	0	54	1.00
1010718--1010814	51	1.9	50	86	12	137	45	0	1	53	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014172--1014259	31	3.0	28	76	14	79	42	15	4	37	1.68
1014408--1014488	37	2.1	39	82	8	96	41	3	2	51	1.32
1019064--1019101	20	1.9	20	88	0	58	36	15	10	36	1.82
1023043--1023085	4	10.8	4	84	0	50	55	2	2	39	1.25
1023043--1023085	6	7.2	6	83	0	50	55	2	2	39	1.25
1023043--1023085	10	4.3	10	87	0	50	55	2	2	39	1.25
1024238--1024425	35	5.1	35	71	12	153	53	1	2	42	1.24
1024696--1024728	16	2.1	16	88	11	50	33	0	0	66	0.92
1024719--1024764	20	2.3	20	76	0	56	50	2	0	47	1.13
1025415--1025556	37	3.9	36	70	10	108	48	2	1	47	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27