genome.fa.s89.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold89
Parameters: 2 7 7 80 10 50 1000
Length:  5168001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  6  of  27  ( 3236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735177--735558	132	3.0	125	73	13	348	34	9	4	50	1.56
735512--735572	30	2.0	30	93	0	104	40	8	1	49	1.42
735695--735755	30	2.0	30	93	0	104	40	8	1	49	1.42
735484--735839	183	1.9	183	98	0	685	45	9	5	39	1.61
736052--736113	33	1.9	33	83	6	83	50	1	0	48	1.10
736249--736300	26	2.0	27	88	11	81	36	1	0	61	1.07
736868--736894	2	13.5	2	100	0	54	48	0	0	51	1.00
741262--741292	3	10.3	3	100	0	62	35	0	0	64	0.94
741699--741740	21	2.0	21	86	9	59	66	0	0	33	0.92
742952--742988	17	2.2	18	85	9	51	59	5	10	24	1.52
743030--743114	39	2.2	38	83	8	107	50	1	12	35	1.48
743621--743669	17	2.8	18	84	9	66	65	0	2	32	1.04
743621--743670	16	3.0	16	83	13	57	64	0	2	34	1.05
744042--744087	17	3.0	15	85	14	67	50	0	0	50	1.00
744177--744263	28	3.0	29	83	5	104	60	0	2	36	1.09
744219--744280	28	2.2	26	76	15	61	58	0	1	40	1.08
746197--746232	18	1.9	19	88	5	56	63	2	2	30	1.22
746220--746280	25	2.5	25	76	21	67	52	3	0	44	1.17
746990--747023	2	17.0	2	93	0	59	0	52	0	47	1.00
747209--747242	2	17.0	2	100	0	68	50	0	0	50	1.00
749253--749281	14	2.0	15	93	6	51	41	0	0	58	0.98
749457--749491	18	1.9	18	94	0	61	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749509--749588	32	2.5	31	84	6	97	45	0	2	52	1.14
749573--749611	20	1.9	21	89	5	62	33	0	0	66	0.92
749570--749621	25	2.2	23	82	6	59	32	0	0	67	0.91
750220--750259	20	2.0	21	85	14	57	57	5	0	37	1.21
751009--751069	17	3.6	17	72	12	63	34	11	3	50	1.55
751014--751080	33	2.0	33	97	0	125	37	10	2	49	1.53
753473--753503	2	15.5	2	100	0	62	0	48	0	51	1.00
755935--755966	2	16.0	2	100	0	64	50	0	50	0	1.00
756615--756663	19	2.6	18	87	6	62	71	0	6	22	1.08
757612--757667	20	3.2	17	79	16	60	42	0	0	57	0.99
757617--757655	20	2.0	20	90	5	62	43	0	0	56	0.99
757623--757720	30	3.5	28	65	15	67	40	1	0	58	1.05
757612--757663	19	2.8	19	83	11	63	44	0	0	55	0.99
758194--758228	12	3.2	11	88	11	54	0	8	0	91	0.42
772286--772346	26	2.3	26	83	5	79	60	0	0	39	0.97
772305--772346	14	3.1	14	80	10	52	61	0	0	38	0.96
775975--776037	12	5.4	12	72	11	51	53	3	0	42	1.16
775976--776043	34	2.0	33	86	8	93	52	2	0	44	1.16
776237--776265	9	3.0	10	90	10	51	51	0	0	48	1.00
776825--776870	22	2.2	21	85	11	60	52	2	0	45	1.13
777795--777854	20	3.1	19	77	15	61	41	0	0	58	0.98
777817--777900	11	8.1	11	75	11	79	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777821--777884	17	4.1	17	73	18	68	34	0	0	65	0.93
777831--777888	30	1.9	31	92	3	100	34	0	0	65	0.93
777793--777919	34	3.6	34	73	16	107	38	0	0	60	1.02
777830--777919	42	2.2	40	84	7	117	36	0	1	62	1.03
778556--778628	13	5.6	13	71	16	53	32	4	0	63	1.14
778659--778704	19	2.4	19	82	10	58	47	2	0	50	1.13
778711--778743	12	2.8	12	86	4	50	51	6	0	42	1.26
779091--779172	17	4.6	17	73	19	69	50	0	1	48	1.08
779304--779329	13	2.0	13	100	0	52	61	0	0	38	0.96
779404--779456	18	3.0	19	76	23	62	49	0	3	47	1.19
779400--779456	16	3.3	18	77	22	61	49	0	3	47	1.18
779569--779608	14	2.9	15	82	14	50	62	0	0	37	0.95
779890--779931	15	2.8	14	86	13	57	50	2	0	47	1.14
779880--779934	23	2.3	24	87	9	78	45	1	0	52	1.11
792183--792250	17	4.1	16	74	7	55	45	0	0	54	0.99
792228--792300	11	7.2	10	73	17	53	41	4	0	54	1.19
792221--792279	17	3.8	17	69	26	51	42	1	0	55	1.09
792215--792289	29	2.5	28	74	18	71	42	2	0	54	1.14
793143--793210	27	2.3	29	80	12	77	47	0	0	52	1.00
793205--793263	30	1.9	31	89	3	93	57	0	0	42	0.98
793644--793671	3	9.3	3	100	0	56	67	0	0	32	0.91
793783--793817	11	3.1	12	88	12	56	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793769--793821	22	2.5	21	79	14	56	62	1	0	35	1.06
794654--794689	14	2.6	14	95	0	63	41	0	0	58	0.98
794957--795009	23	2.3	22	71	9	52	37	0	3	58	1.16
794971--795006	11	3.2	11	88	4	54	30	0	5	63	1.17
795346--795383	20	1.9	20	88	0	58	26	5	21	47	1.71
795891--795961	31	2.2	31	80	5	79	57	0	4	38	1.18
797000--797052	21	2.5	21	74	17	56	56	1	5	35	1.34
797044--797084	15	2.7	16	81	7	50	51	0	2	46	1.14
797750--797776	3	9.0	3	100	0	54	66	0	0	33	0.92
799401--799589	103	1.8	103	95	0	342	29	16	13	40	1.87
801329--801387	29	2.0	30	87	9	86	37	3	6	52	1.45
801330--801380	14	3.4	16	75	20	56	35	3	3	56	1.36
802576--802627	18	3.0	17	81	10	61	40	1	0	57	1.10
803010--803035	3	8.7	3	100	0	52	65	0	0	34	0.93
805174--805204	14	2.2	14	94	0	53	61	0	6	32	1.21
806476--806527	3	17.3	3	100	0	104	67	0	0	32	0.91
807350--807378	13	2.1	14	93	6	51	31	0	3	65	1.09
807904--807945	15	2.8	16	75	14	52	54	0	0	45	0.99
810241--810273	2	16.5	2	100	0	66	51	0	0	48	1.00
816459--816671	109	1.9	111	81	5	254	39	15	19	25	1.90
820216--820261	24	2.0	24	82	4	58	56	2	0	41	1.11
820193--820255	33	2.0	32	87	9	94	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
823328--823369	21	2.0	20	86	4	57	69	2	0	28	1.01
823585--823620	16	2.2	17	90	5	56	58	2	0	38	1.13
826039--826064	3	8.7	3	100	0	52	65	0	0	34	0.93
827101--827158	21	2.7	21	86	7	73	37	0	0	62	0.96
829280--829340	19	3.3	18	80	17	63	57	0	0	42	0.98
829281--829334	17	3.1	17	77	15	56	57	0	0	42	0.98
829880--829917	15	2.5	15	84	12	51	65	0	0	34	0.93
830810--830866	26	2.1	27	90	3	89	40	0	0	59	0.97
831603--831657	22	2.5	23	82	8	69	41	5	1	50	1.36
831956--831981	2	13.0	2	100	0	52	50	0	0	50	1.00
832423--832475	14	3.9	14	73	14	56	49	1	0	49	1.12
833142--833173	16	2.0	16	93	0	55	34	6	12	46	1.67
836670--836713	2	22.5	2	86	4	63	50	0	2	47	1.13
842504--842530	2	13.5	2	100	0	54	51	0	0	48	1.00
845155--845205	26	2.0	25	85	11	68	37	5	11	45	1.65
845210--845262	27	2.0	27	81	7	63	39	1	3	54	1.29
845947--845982	3	12.0	3	100	0	72	33	0	0	66	0.92
846842--846885	23	1.9	23	86	9	63	34	4	4	56	1.40
847926--847989	31	2.1	31	85	8	87	37	1	10	50	1.47
849418--849461	2	22.0	2	100	0	88	50	0	0	50	1.00
851549--851580	2	16.0	2	100	0	64	0	50	0	50	1.00
852330--852355	7	3.7	7	100	0	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
857749--857798	14	3.8	14	77	20	54	62	0	2	36	1.07
857749--857867	33	3.6	32	81	14	100	60	0	0	37	1.09
857762--857806	20	2.2	20	88	8	63	68	0	0	31	0.89
857806--857864	17	3.6	17	74	21	63	57	1	0	40	1.09
857762--857876	58	2.0	58	84	6	153	60	0	0	38	1.03
857785--857867	33	2.5	33	86	11	116	60	1	0	38	1.05
859756--859802	18	2.6	18	80	12	51	82	2	4	10	0.88
860233--860271	12	3.2	12	88	0	51	33	0	2	64	1.08
861779--861813	2	17.5	2	100	0	70	51	0	48	0	1.00
867434--867554	54	2.2	54	85	2	163	18	32	27	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27