genome.fa.s89.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold89
Parameters: 2 7 7 80 10 50 1000
Length:  5168001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  5  of  27  ( 3236 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593928--594028	52	1.9	52	82	11	127	50	1	0	46	1.19
594004--594036	13	2.4	14	85	10	50	54	0	0	45	0.99
593952--594043	6	15.5	6	75	10	66	53	2	0	44	1.12
594086--594130	13	3.2	14	84	9	65	48	2	0	48	1.13
594086--594173	28	3.1	27	79	12	79	52	5	0	42	1.25
594523--594569	2	23.5	2	100	0	94	48	0	0	51	1.00
594673--594895	34	6.6	34	84	2	254	26	7	24	42	1.80
594673--594888	102	2.1	102	87	0	308	26	7	24	41	1.81
599301--599516	102	2.1	101	85	5	292	25	6	25	42	1.80
599301--599518	34	6.5	33	81	5	231	24	6	26	42	1.80
599983--600025	2	22.0	2	95	4	79	48	0	0	51	1.00
600984--601043	31	1.9	31	86	0	84	45	13	5	36	1.65
603186--603213	2	14.0	2	100	0	56	50	0	0	50	1.00
603253--603306	28	2.0	27	85	3	72	29	1	3	64	1.21
604909--605137	50	4.6	50	93	0	386	31	20	20	27	1.97
609531--609748	50	4.4	50	87	4	305	32	17	17	31	1.94
609987--610020	14	2.3	15	90	5	52	35	0	0	64	0.94
609976--610027	16	3.2	16	79	17	54	40	0	1	57	1.10
610350--610393	22	2.0	22	90	0	70	36	4	4	54	1.41
610518--610572	14	3.9	14	73	21	51	72	7	1	18	1.16
619443--619486	16	2.9	15	83	12	54	40	0	0	59	0.98
619455--619486	16	2.1	15	94	5	55	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619634--619690	30	1.9	30	85	7	80	66	1	0	31	1.02
620208--620256	21	2.2	23	89	7	75	32	0	0	67	0.91
621673--621734	16	4.0	15	76	15	63	41	0	0	58	0.98
621682--621742	20	3.3	19	76	21	58	40	0	0	59	0.98
621694--621761	11	6.2	11	73	22	54	44	0	0	55	0.99
622526--622584	17	3.5	16	81	4	64	37	1	13	47	1.53
623667--623865	103	1.9	103	85	5	278	36	6	4	52	1.48
624884--625101	72	3.0	72	85	6	289	51	0	1	45	1.15
624884--625109	37	6.3	37	73	14	177	51	1	1	46	1.17
626417--626498	26	3.4	23	76	18	78	43	0	0	56	0.99
626380--626508	47	2.9	45	71	22	110	47	0	0	52	1.00
626992--627019	13	2.2	13	100	0	56	35	0	0	64	0.94
630659--630701	22	1.9	23	85	4	61	44	2	4	48	1.36
630666--630753	34	2.8	32	77	18	85	46	2	3	47	1.31
630650--630717	16	4.2	16	68	19	52	50	1	2	45	1.26
638716--638807	8	12.7	7	72	21	66	34	0	1	64	1.01
638758--638810	14	3.8	14	75	9	54	33	0	1	64	1.05
638717--638810	28	3.2	28	74	18	93	34	0	1	64	1.00
639266--639316	25	2.0	26	84	3	68	56	0	1	41	1.10
646382--646451	20	3.5	20	75	12	63	58	1	0	40	1.07
646696--646743	25	2.0	25	95	4	89	50	0	0	50	1.00
649979--650008	15	2.0	15	100	0	60	26	0	6	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651615--651652	11	3.5	11	79	13	51	39	0	2	57	1.12
652934--652989	20	2.8	20	78	15	62	42	0	0	57	0.99
652944--652999	26	2.2	25	78	9	58	41	0	0	58	0.98
652957--653016	26	2.3	26	86	8	86	40	0	0	60	0.97
652929--653040	16	7.8	15	70	19	62	37	0	0	62	0.95
653487--653526	20	1.9	19	85	14	53	5	12	7	75	1.18
653933--653975	2	22.0	2	95	4	79	48	0	0	51	1.00
662771--662837	21	3.1	20	79	12	71	55	0	0	44	0.99
662858--662900	16	2.5	18	77	7	54	69	2	0	27	1.00
662862--662928	23	2.9	23	82	4	82	67	2	1	28	1.14
662858--662912	12	4.8	12	75	6	51	69	1	0	29	0.99
665062--665097	16	2.3	16	90	4	56	50	0	2	47	1.15
666011--666037	2	13.5	2	100	0	54	48	0	0	51	1.00
666082--666158	40	1.9	39	82	7	93	32	10	2	54	1.48
666649--666689	2	20.5	2	100	0	82	0	48	0	51	1.00
667203--667231	3	9.7	3	100	0	58	34	0	0	65	0.93
668470--668539	35	2.0	34	94	2	122	40	11	8	40	1.72
676231--676286	17	3.5	17	80	9	64	51	0	1	46	1.11
676242--676288	15	3.0	15	76	17	51	57	0	0	42	0.98
676293--676352	24	2.5	24	83	8	68	41	0	3	55	1.16
676306--676352	25	1.9	24	86	4	67	40	0	4	55	1.19
678137--678189	26	2.0	26	96	0	97	16	7	1	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678201--678248	23	2.1	23	84	3	62	58	4	0	37	1.18
678321--678361	16	2.6	16	88	0	55	51	2	0	46	1.14
678514--678572	25	2.2	26	88	8	84	50	1	0	47	1.11
678529--678580	25	2.1	25	85	7	70	55	1	1	40	1.22
678874--678923	23	2.1	25	85	7	68	62	6	0	32	1.20
678883--678961	23	3.3	23	79	12	63	59	2	0	37	1.11
678926--678963	12	3.1	13	85	11	53	63	0	0	36	0.95
679003--679062	31	1.9	31	86	6	86	46	0	0	53	1.00
679065--679090	3	8.7	3	100	0	52	34	0	0	65	0.93
679135--679178	21	2.1	21	86	0	61	40	4	0	54	1.21
679536--679572	14	2.5	15	86	8	58	40	0	0	59	0.97
681786--681818	14	2.3	15	90	10	52	63	0	0	36	0.95
691977--692001	2	12.5	2	100	0	50	0	0	48	52	1.00
693977--694019	2	21.5	2	100	0	86	48	0	0	51	1.00
698792--698823	15	2.1	16	94	5	57	56	6	0	37	1.25
699281--699324	14	3.2	14	77	3	54	40	0	0	59	0.98
699600--699669	15	4.6	16	73	19	69	58	0	1	40	1.07
704575--704614	19	2.0	20	85	4	55	70	0	0	30	0.88
705241--705300	29	2.0	28	84	12	75	56	0	0	43	0.99
705256--705317	17	3.8	17	76	16	60	56	0	0	43	0.99
705970--706033	9	6.7	9	73	19	58	65	1	1	31	1.11
706339--706424	26	3.1	28	80	14	83	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706334--706432	16	6.1	17	73	20	79	41	0	0	58	0.98
706483--706512	9	3.3	9	95	0	51	26	0	0	73	0.84
706584--706642	25	2.4	24	73	18	57	52	0	0	47	1.00
708640--708677	12	3.2	12	88	3	60	52	0	0	47	1.00
709190--709215	10	2.6	10	100	0	52	26	0	0	73	0.84
709706--709762	15	3.6	15	77	15	53	45	0	0	54	0.99
709778--709825	12	3.9	12	74	15	53	72	0	0	27	0.84
709773--709821	24	2.0	25	88	4	73	69	2	0	28	1.00
710176--710213	11	3.0	13	85	14	53	68	0	0	31	0.90
710175--710226	19	2.7	19	81	3	59	63	0	0	36	0.95
710187--710258	35	2.1	35	81	5	83	52	2	0	44	1.15
710200--710269	18	3.9	18	70	12	54	45	2	0	51	1.16
711187--711251	22	3.1	22	75	18	68	35	1	0	63	1.04
711557--711604	23	2.1	22	84	3	60	52	0	2	45	1.12
719027--719089	16	4.0	15	79	6	63	17	17	19	46	1.85
719086--719144	16	3.7	16	86	0	73	28	22	15	33	1.94
719427--719481	15	3.7	15	75	15	53	38	1	1	58	1.20
719427--719489	16	4.1	16	74	13	53	39	1	3	55	1.25
719688--719759	24	3.0	22	75	17	56	48	1	1	48	1.18
720800--720857	24	2.5	23	80	2	62	53	1	0	44	1.10
722893--722925	16	2.0	17	94	5	59	54	0	0	45	0.99
722899--722982	17	4.7	17	69	15	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723217--723283	23	2.9	23	80	4	82	43	0	1	55	1.09
723511--723570	31	2.0	31	90	3	95	41	1	0	56	1.09
723547--723607	17	3.6	17	82	8	72	44	0	0	55	0.99
723568--723606	21	1.9	20	85	15	53	43	0	0	56	0.99
723680--723707	2	14.0	2	100	0	56	50	0	0	50	1.00
725429--725799	186	2.0	183	92	1	607	26	15	20	36	1.93
733813--733837	13	1.9	13	100	0	50	48	0	12	40	1.40
735032--735080	2	24.5	2	100	0	98	48	0	0	51	1.00
735129--735533	127	3.2	123	75	10	389	34	9	5	50	1.58
735074--735558	259	1.9	248	83	7	620	34	9	5	50	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27