genome.fa.s92.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold92
Parameters: 2 7 7 80 10 50 1000
Length:  2337674

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  16  of  19  ( 2187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1926384--1926437	25	2.1	25	82	3	63	37	16	5	40	1.72
1926545--1926583	18	2.2	18	95	0	69	61	0	0	38	0.96
1926545--1926607	17	3.6	17	80	10	74	55	0	0	44	0.99
1926865--1926929	11	5.8	11	72	16	53	47	0	0	52	1.00
1926860--1926936	34	2.3	32	82	6	91	46	0	0	53	1.00
1926980--1927013	18	1.9	18	88	5	52	35	0	0	64	0.94
1926983--1927037	26	2.2	25	83	3	65	41	0	0	58	0.98
1927078--1927124	21	2.3	21	82	17	64	59	0	0	40	0.97
1927195--1927235	17	2.2	19	83	16	50	21	4	4	68	1.28
1927492--1927535	15	2.9	15	80	6	52	54	2	0	43	1.12
1927495--1927542	16	3.1	16	80	14	55	56	4	0	39	1.19
1927969--1928051	37	2.2	37	85	10	107	54	1	1	43	1.16
1928337--1928362	2	13.0	2	100	0	52	50	0	0	50	1.00
1930645--1930689	23	2.0	23	81	0	54	62	2	0	35	1.08
1930715--1930777	19	3.0	21	73	20	53	42	1	6	49	1.37
1930717--1930775	22	2.6	21	74	15	55	44	1	6	47	1.39
1932639--1932720	37	2.2	36	89	8	121	53	1	2	42	1.21
1933594--1933627	2	17.0	2	100	0	68	50	0	0	50	1.00
1938411--1938508	41	2.4	42	76	8	105	52	2	2	43	1.24
1938766--1938817	22	2.3	22	83	9	70	46	0	0	53	1.00
1939257--1939287	9	3.4	9	95	0	53	61	0	0	38	0.96
1939328--1939423	45	2.1	45	86	0	129	56	16	0	27	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940466--1940499	8	4.1	8	92	7	59	85	0	2	11	0.71
1940466--1940499	17	2.1	16	94	5	59	85	0	2	11	0.71
1940808--1940870	10	6.3	10	74	7	56	68	1	0	30	0.99
1940798--1940857	29	2.0	31	90	6	97	63	0	0	36	0.95
1942909--1942956	19	2.4	20	82	6	62	43	0	0	56	0.99
1942919--1942959	20	2.1	20	86	13	59	34	0	0	65	0.93
1944745--1944787	18	2.3	18	84	4	50	51	9	0	39	1.34
1946697--1946729	16	2.0	17	94	5	59	60	0	0	39	0.97
1951919--1951983	33	2.0	33	87	6	96	35	15	15	33	1.89
1952552--1952660	34	3.2	34	76	7	114	38	11	18	31	1.87
1954572--1954605	17	2.0	17	88	0	50	17	5	11	64	1.45
1954766--1954805	19	2.0	20	85	4	55	15	7	15	62	1.53
1956830--1956879	25	2.0	26	88	4	75	56	2	26	16	1.51
1958147--1958245	34	2.9	34	78	0	108	33	10	20	36	1.86
1959913--1959949	11	3.5	11	88	7	58	0	10	0	89	0.49
1959910--1959949	21	1.9	21	94	0	71	0	10	0	90	0.47
1959910--1959950	15	2.8	15	88	3	57	0	9	0	90	0.46
1960052--1960104	23	2.2	25	77	16	58	50	0	0	49	1.00
1960477--1960518	21	2.0	21	85	0	57	47	2	4	45	1.36
1960476--1960524	21	2.2	22	78	10	55	44	2	4	48	1.33
1962414--1962450	14	2.8	13	84	8	56	35	0	0	64	0.94
1962428--1962495	34	2.0	34	82	5	84	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1962817--1962863	19	2.6	18	77	9	51	68	0	0	31	0.90
1962808--1962853	19	2.4	18	82	10	56	63	0	0	36	0.95
1966858--1966895	14	2.6	15	84	16	53	71	0	0	28	0.87
1968014--1968067	20	2.8	20	88	2	74	37	12	14	35	1.85
1968086--1968139	20	2.7	20	97	0	99	35	14	14	35	1.88
1975540--1975593	20	2.7	20	88	5	74	35	16	14	33	1.90
1976599--1976651	24	2.3	23	83	9	63	56	1	1	39	1.21
1977617--1977677	17	3.5	18	76	10	56	47	1	4	45	1.34
1977776--1977802	2	13.5	2	100	0	54	51	0	0	48	1.00
1977781--1977868	43	2.0	43	93	0	149	47	5	7	38	1.56
1978158--1978183	3	8.7	3	100	0	52	30	0	0	69	0.89
1981662--1981719	24	2.4	24	86	11	75	10	20	17	51	1.74
1981782--1981888	42	2.5	42	77	19	121	17	2	6	72	1.18
1981792--1981888	51	1.9	51	83	8	126	18	3	6	72	1.19
1981779--1981862	8	10.2	8	74	23	68	15	2	8	73	1.17
1983071--1983115	22	2.0	23	86	4	65	55	4	11	28	1.54
1983771--1983817	24	2.0	25	84	12	64	63	2	0	34	1.06
1984487--1984528	14	3.0	14	79	10	50	35	0	0	64	0.94
1984500--1984542	21	2.0	21	86	8	61	32	0	0	67	0.91
1984772--1984822	18	2.9	17	80	11	59	49	1	5	43	1.38
1984921--1984949	2	14.5	2	100	0	58	51	0	0	48	1.00
1987421--1987469	21	2.4	21	84	15	68	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1988437--1988476	19	2.1	19	85	0	53	60	0	0	40	0.97
1990356--1990405	16	3.1	16	80	8	57	62	0	0	38	0.96
1990343--1990397	26	2.1	25	83	16	67	63	0	0	36	0.95
1990335--1990416	16	5.1	16	73	15	53	64	0	0	35	0.94
1991061--1991095	14	2.5	14	85	0	52	48	0	0	51	1.00
1991693--1991723	16	1.9	16	93	0	53	61	3	0	35	1.12
1992068--1992123	11	5.6	11	76	20	52	73	0	0	26	0.84
1992050--1992123	38	1.9	38	88	0	112	67	1	0	31	0.99
1992117--1992170	20	2.7	20	85	8	65	57	1	1	38	1.20
1992077--1992175	11	8.9	11	68	25	57	63	1	1	34	1.08
1992958--1992982	13	1.9	13	100	0	50	72	0	0	28	0.86
1994659--1994715	15	3.9	15	68	13	55	36	3	1	57	1.26
1994690--1994795	34	3.1	34	78	13	103	35	1	2	59	1.23
1994685--1994765	17	4.5	19	67	25	52	37	1	1	60	1.13
1995518--1995564	18	2.4	20	75	10	53	42	0	0	57	0.98
1995717--1995764	21	2.3	21	88	0	69	58	2	0	39	1.10
1995974--1996070	32	3.0	32	73	16	92	49	0	0	50	1.00
1995973--1996047	33	2.3	33	80	11	84	53	0	0	46	1.00
1996243--1996272	3	10.0	3	92	0	51	63	0	3	33	1.11
1998114--1998138	2	12.5	2	100	0	50	52	0	0	48	1.00
2000367--2000406	20	2.1	20	86	9	57	42	0	2	55	1.13
2000546--2000578	14	2.3	15	85	15	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2000847--2000875	14	2.1	14	93	6	51	75	0	3	20	0.94
2001005--2001042	19	2.0	20	84	5	51	65	0	5	28	1.14
2001297--2001417	30	3.8	31	83	7	129	42	3	1	52	1.27
2001292--2001413	63	1.9	65	85	8	169	42	3	2	51	1.31
2001615--2001685	34	2.1	34	84	5	90	35	0	2	61	1.10
2001665--2001711	20	2.3	20	82	10	60	42	0	0	57	0.98
2002085--2002123	18	2.2	18	86	9	53	23	2	5	69	1.21
2002167--2002203	14	2.5	15	86	13	58	27	0	0	72	0.84
2003753--2003810	18	2.7	22	75	25	70	53	1	0	44	1.10
2003753--2003810	20	2.8	21	79	10	66	53	1	0	44	1.10
2003826--2003879	20	2.7	19	85	5	63	27	3	0	68	1.06
2003831--2003879	21	2.3	21	86	10	64	26	4	0	69	1.06
2008619--2008664	22	2.1	22	87	0	65	23	17	17	41	1.90
2010265--2010313	20	2.5	19	77	9	53	42	0	0	57	0.99
2011257--2011327	20	3.7	18	79	7	70	35	18	12	33	1.89
2011258--2011332	38	1.9	40	91	5	127	34	17	12	36	1.87
2011300--2011375	32	2.4	33	91	6	122	36	15	13	34	1.87
2011403--2011456	20	2.7	20	85	5	65	37	12	12	37	1.83
2016168--2016198	16	1.9	16	93	0	53	54	0	9	35	1.33
2020090--2020194	20	5.7	19	73	19	82	36	17	14	32	1.89
2020090--2020196	19	5.8	19	76	19	95	36	16	14	31	1.90
2020130--2020155	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2020111--2020174	32	2.0	32	96	0	119	34	14	15	35	1.88
2020224--2020277	20	2.7	20	88	5	74	33	14	16	35	1.90
2021452--2021521	27	2.6	27	88	0	104	21	15	37	25	1.93
2021924--2021958	10	3.4	10	84	7	52	54	5	0	40	1.24
2023818--2023874	20	2.8	20	94	0	105	40	12	19	28	1.87
2024198--2024232	18	1.9	18	100	0	70	37	5	34	22	1.78
2025123--2025159	14	2.6	14	91	0	56	48	2	0	48	1.15
2029872--2029900	2	14.5	2	100	0	58	48	0	0	51	1.00
2029936--2030025	28	3.3	27	84	4	103	47	5	0	46	1.25
2030634--2030680	16	2.9	18	70	26	50	70	0	0	29	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19