genome.fa.s92.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold92
Parameters: 2 7 7 80 10 50 1000
Length:  2337674

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  4  of  19  ( 2187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583547--583598	15	3.3	15	78	19	61	63	0	0	36	0.95
583539--583603	32	2.0	34	90	6	107	60	0	0	40	0.97
584948--585011	32	2.0	33	90	3	103	48	0	4	46	1.23
584954--585008	17	3.4	17	75	25	64	52	0	3	43	1.18
585001--585057	15	3.9	14	74	14	53	57	1	0	40	1.09
585219--585262	23	1.9	23	86	9	63	56	0	0	43	0.99
585255--585292	16	2.3	16	86	4	58	31	0	0	68	0.90
586357--586398	18	2.5	17	81	11	50	61	0	0	38	0.96
586361--586440	28	2.9	28	78	10	78	60	0	0	40	0.97
586722--586824	19	5.2	21	67	28	59	62	0	0	36	1.02
586728--586826	29	3.3	30	76	13	105	60	0	1	38	1.04
586728--586852	24	5.1	24	70	17	87	60	0	0	39	1.03
586781--586856	22	3.2	24	75	15	70	61	0	0	38	0.96
587211--587266	22	2.6	21	77	5	58	35	1	0	62	1.06
587447--587497	27	1.9	27	84	11	70	27	7	3	60	1.42
591449--591520	23	3.2	23	72	9	67	45	0	0	54	0.99
591459--591526	23	3.0	23	73	16	70	50	0	0	50	1.00
593667--593709	2	21.5	2	95	0	77	48	2	0	48	1.14
602768--602800	17	1.9	17	88	11	50	48	0	0	51	1.00
606210--606249	13	3.2	12	86	10	53	62	0	0	37	0.95
606218--606270	17	2.9	18	77	8	54	62	0	1	35	1.06
606459--606501	19	2.1	21	87	8	63	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608018--608061	13	3.3	13	84	12	54	50	2	2	45	1.27
608048--608086	20	1.9	21	89	5	62	41	0	2	56	1.13
608434--608488	5	11.2	5	79	14	53	34	1	1	61	1.17
608440--608510	29	2.5	30	77	9	76	36	1	2	59	1.21
608497--608552	21	2.7	21	71	15	53	33	0	1	64	1.04
609127--609197	32	2.2	33	82	2	81	40	2	0	56	1.14
609441--609470	2	15.0	2	100	0	60	50	0	0	50	1.00
611990--612080	26	3.4	28	75	14	66	49	1	0	49	1.08
612010--612096	21	4.3	20	70	17	56	48	1	0	50	1.08
612059--612107	23	2.1	23	85	7	64	40	2	0	57	1.10
612270--612307	18	2.1	19	90	9	62	42	0	0	57	0.98
613746--613781	17	2.1	17	89	0	54	61	0	0	38	0.96
614946--614985	19	2.1	19	86	9	55	32	0	0	67	0.91
614945--614992	17	2.6	19	77	12	55	37	0	0	62	0.95
614993--615044	19	2.7	20	82	8	72	50	0	0	50	1.00
618195--618257	26	2.5	25	76	14	67	50	4	0	44	1.23
618540--618580	2	20.5	2	94	0	73	48	2	0	48	1.14
618757--618800	23	2.0	22	86	13	63	52	0	2	45	1.13
621785--621831	15	2.9	16	73	20	53	51	2	0	46	1.13
622276--622333	31	1.9	29	83	13	73	44	3	1	50	1.29
622712--622746	3	11.7	3	100	0	70	34	0	0	65	0.93
623827--623852	8	3.2	8	100	0	52	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631986--632011	13	2.0	13	100	0	52	38	15	15	30	1.88
632466--632570	25	4.3	25	73	15	85	57	0	0	41	1.05
632544--632594	21	2.5	20	87	12	68	45	0	0	54	0.99
632717--632765	3	16.0	3	87	4	71	30	2	2	65	1.15
632996--633042	19	2.4	20	82	3	60	55	0	0	44	0.99
633113--633152	11	3.8	11	81	18	50	35	0	0	65	0.93
637321--637369	18	2.8	17	78	6	53	59	0	0	40	0.98
637369--637404	16	2.2	16	90	0	54	55	2	0	41	1.14
637376--637418	16	3.0	14	86	10	52	51	2	0	46	1.13
639820--639876	27	2.2	26	83	3	69	47	1	0	50	1.11
639825--639933	47	2.4	44	80	13	107	48	0	0	49	1.13
640876--640937	31	2.0	32	90	9	101	53	0	0	46	1.00
640859--640940	31	2.9	26	77	20	85	52	1	0	46	1.08
640879--640947	31	2.2	31	84	10	86	52	0	1	46	1.09
641074--641133	2	30.0	2	100	0	120	50	0	0	50	1.00
642963--643022	15	4.1	15	72	16	54	43	0	0	56	0.99
642969--643027	31	1.9	30	82	3	73	45	0	0	54	0.99
642999--643057	17	3.5	17	77	8	59	44	0	0	55	0.99
643053--643092	12	3.4	12	82	3	55	62	0	0	37	0.95
643046--643092	22	2.0	22	88	8	67	55	0	0	44	0.99
643746--643777	3	10.7	3	93	0	55	65	0	0	34	0.93
646117--646178	21	2.7	23	75	17	56	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646039--646228	87	2.2	88	90	3	312	52	1	4	41	1.32
646483--646527	12	3.8	12	88	8	65	33	0	0	66	0.92
646483--646537	21	2.8	21	79	15	57	30	0	0	69	0.89
646482--646546	29	2.1	33	83	11	84	36	0	0	63	0.95
647548--647620	11	6.5	11	83	9	85	65	0	0	34	0.93
647530--647618	46	1.9	46	84	4	117	64	0	1	34	1.01
647536--647639	35	2.7	39	77	18	121	65	0	0	33	0.99
647527--647650	46	2.7	45	75	14	112	62	0	2	35	1.09
647694--647737	19	2.5	17	79	13	52	59	0	6	34	1.24
648135--648181	24	1.9	24	87	12	69	63	0	0	36	0.94
648410--648486	30	2.6	30	79	4	93	40	9	1	49	1.43
649946--649977	2	16.0	2	100	0	64	50	0	0	50	1.00
650169--650321	83	1.8	83	88	0	234	47	9	7	35	1.65
661353--661378	11	2.4	11	100	0	52	46	0	53	0	1.00
661599--661646	24	2.1	22	84	7	60	64	0	0	35	0.94
661594--661694	34	3.0	33	77	13	100	60	1	0	37	1.08
661820--661886	29	2.5	26	83	9	80	46	0	0	53	1.00
667491--667559	21	3.2	22	74	17	65	39	0	1	59	1.06
672004--672038	17	2.1	17	88	0	52	42	5	2	48	1.41
672833--672873	13	3.2	13	85	0	55	46	19	24	9	1.80
676720--676806	6	15.3	6	74	13	78	54	0	0	45	1.00
676725--676766	21	2.0	21	90	0	66	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677587--677681	33	2.9	32	78	6	84	51	0	0	48	1.00
677634--677694	30	2.0	30	84	6	79	52	0	0	47	1.00
678532--678572	19	2.2	20	86	8	59	43	2	0	53	1.13
678540--678580	20	2.0	21	90	4	66	48	0	0	51	1.00
678551--678652	29	3.4	29	75	14	75	52	0	0	47	1.00
678577--678669	29	3.2	29	76	18	79	58	0	0	41	0.98
678626--678683	22	2.4	25	81	16	70	65	0	0	34	0.93
678617--678682	29	2.3	29	81	5	80	63	0	0	36	0.95
679712--679755	2	22.0	2	95	0	79	47	0	2	50	1.13
684352--684406	3	18.7	3	96	3	103	67	0	0	32	0.91
685289--685324	17	2.1	18	89	5	56	44	0	0	55	0.99
685703--685747	13	3.6	12	79	8	54	42	0	0	57	0.98
687140--687228	38	2.3	38	80	7	99	51	1	4	42	1.29
688017--688055	2	19.5	2	94	0	69	48	0	2	48	1.15
689007--689087	35	2.4	33	78	12	92	55	0	1	43	1.07
689745--689800	22	2.5	23	75	16	64	42	0	0	57	0.99
692669--692719	2	25.5	2	91	0	84	50	0	1	47	1.12
695409--695488	28	2.9	28	75	17	85	25	6	23	45	1.76
698050--698095	21	2.1	22	84	4	58	30	17	30	21	1.96
701581--701801	34	6.5	33	81	11	259	41	26	7	24	1.82
701581--701801	102	2.2	101	89	3	345	41	26	7	24	1.82
706214--706432	34	6.5	33	82	9	253	40	26	7	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706216--706432	68	3.2	67	84	3	283	40	26	7	25	1.82
706214--706432	102	2.2	101	88	1	339	40	26	7	25	1.82
707357--707403	2	23.5	2	100	0	94	51	0	48	0	1.00
709089--709135	2	23.5	2	100	0	94	48	0	0	51	1.00
718462--718501	2	20.5	2	94	5	73	50	0	0	50	1.00
719137--719203	27	2.5	28	79	16	79	47	2	0	49	1.16
719092--719185	37	2.8	33	70	19	77	43	1	0	55	1.06
719323--719370	18	2.5	20	77	16	57	43	0	0	56	0.99
719289--719409	20	5.8	22	66	24	66	42	0	1	55	1.09
719334--719400	14	4.4	14	73	15	53	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19