Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold92
Parameters: 2 7 7 80 10 50 1000
Length:  2337674

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  19  of  19  ( 2187 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2313300--2313386
32
2.6
33
81
7
104
45
0
1
52
1.08
2313363--2313399
12
2.9
12
92
8
56
35
0
0
64
0.94
2313363--2313411
17
2.8
17
90
6
71
34
0
2
63
1.06
2313619--2313668
11
4.9
10
80
9
57
36
8
0
56
1.29
2313619--2313677
30
1.9
30
86
10
84
38
8
0
52
1.32
2313630--2313721
27
3.3
28
77
17
86
40
4
0
55
1.20
2313708--2313755
11
4.6
11
80
12
57
31
0
0
68
0.90
2313700--2313781
21
4.2
21
73
17
70
31
1
1
65
1.08
2314102--2314160
22
2.7
21
87
12
84
54
0
0
45
0.99
2314102--2314160
21
2.8
21
87
12
77
54
0
0
45
0.99
2314281--2314358
27
2.8
28
78
9
79
50
0
1
48
1.09
2315425--2315469
11
4.1
12
75
18
53
48
0
0
51
1.00
2316073--2316102
14
2.1
15
93
6
53
56
0
0
43
0.99
2318169--2318208
21
2.0
20
90
9
64
45
0
2
52
1.14
2318164--2318213
21
2.4
22
75
25
54
44
0
2
54
1.11
2318223--2318280
30
2.0
29
86
10
82
39
3
0
56
1.16
2318461--2318500
15
2.8
14
88
7
62
55
0
0
45
0.99
2318470--2318540
22
3.6
21
71
23
64
49
0
0
50
1.00
2318461--2318512
15
3.5
16
78
21
60
53
0
0
46
1.00
2318506--2318550
22
2.0
22
87
8
65
44
2
0
53
1.13
2318470--2318550
16
5.4
16
73
16
50
48
1
0
50
1.08
2318504--2318556
22
2.5
22
77
20
58
43
1
0
54
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2320362--2320414
24
2.2
24
82
0
61
37
18
1
41
1.62
2329032--2329056
13
1.9
13
100
0
50
32
16
16
36
1.90
2332771--2332845
20
3.8
20
80
0
96
33
13
12
41
1.81
2332771--2332848
40
2.0
39
89
2
120
33
12
12
41
1.82
2335152--2335181
10
3.0
10
95
0
51
83
10
0
6
0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19

The End!