genome.fa.s92.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold92
Parameters: 2 7 7 80 10 50 1000
Length:  2337674

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  6  of  19  ( 2187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
833138--833174	2	18.5	2	94	0	65	45	0	0	54	1.00
834209--834250	17	2.4	17	88	11	59	50	0	0	50	1.00
834399--834443	11	3.7	13	83	16	53	28	0	2	68	1.01
834445--834520	30	2.6	30	78	2	82	42	6	1	50	1.37
834496--834543	17	2.8	16	81	12	51	41	8	2	47	1.45
835740--835783	22	2.0	23	82	13	56	43	0	2	54	1.12
836005--836069	25	2.4	25	80	16	69	43	0	0	56	0.99
836036--836094	18	3.7	15	75	25	50	47	1	0	50	1.11
836629--836673	14	3.1	15	70	23	51	37	6	17	37	1.76
836624--836690	28	2.4	28	87	0	98	37	5	14	41	1.71
837966--837999	16	2.0	18	88	11	54	44	0	0	55	0.99
837961--837999	16	2.4	16	82	4	51	43	0	0	56	0.99
837981--838013	14	2.3	15	89	5	50	45	0	0	54	0.99
838060--838104	24	2.0	23	86	8	65	51	0	0	48	1.00
838061--838110	22	2.2	23	82	7	57	54	0	0	46	1.00
842453--842522	12	5.4	14	71	23	55	55	0	0	44	0.99
842455--842524	27	2.6	28	78	17	78	57	0	0	42	0.99
842454--842523	13	5.4	13	75	11	63	55	0	0	44	0.99
842467--842541	38	1.9	39	81	7	91	57	0	0	42	0.98
844135--844171	20	1.9	20	88	5	58	64	0	0	35	0.94
846273--846304	2	16.0	2	93	0	55	46	0	3	50	1.17
847541--847599	22	2.9	21	74	18	61	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
849323--849353	2	15.5	2	100	0	62	48	0	0	51	1.00
850406--850437	2	16.0	2	100	0	64	0	50	0	50	1.00
850729--850846	5	23.2	5	70	16	73	54	0	0	45	0.99
850728--850842	38	3.0	38	84	7	144	53	0	0	46	1.00
851113--851170	24	2.3	26	82	8	66	46	0	0	53	1.00
853985--854061	30	2.7	29	76	11	77	42	2	0	54	1.14
854927--854969	15	2.9	15	83	10	61	62	0	0	37	0.95
862341--862382	22	1.9	23	85	9	61	45	0	0	54	0.99
862336--862391	22	2.4	24	72	25	57	44	0	0	55	0.99
865653--865712	27	2.3	26	76	2	66	65	1	1	31	1.13
865760--865797	18	2.1	18	90	9	60	52	0	0	47	1.00
865747--865798	15	3.3	15	78	19	52	48	0	0	51	1.00
865992--866089	39	2.5	39	86	8	144	36	0	0	63	0.95
866138--866184	22	2.2	22	85	7	62	40	8	2	48	1.45
866476--866543	22	2.8	24	76	15	68	45	0	0	54	0.99
866500--866550	16	3.2	16	76	13	52	47	0	0	52	1.00
866475--866543	9	8.2	9	70	20	51	46	0	0	53	1.00
866500--866545	18	2.7	17	86	6	58	45	0	0	54	0.99
867599--867668	31	2.4	30	77	13	74	47	0	0	52	1.00
868119--868147	6	4.8	6	100	0	58	86	0	0	13	0.58
868104--868148	12	3.3	13	84	15	56	82	2	2	13	0.86
870871--870906	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872119--872168	20	2.4	21	73	6	57	54	2	0	44	1.11
872681--872734	16	3.3	16	78	12	56	53	0	0	46	1.00
872685--872750	34	2.0	34	84	3	89	46	0	0	53	1.00
873172--873223	27	2.0	27	85	10	74	51	0	0	48	1.00
879042--879116	17	4.8	17	69	15	63	38	0	0	61	0.96
879087--879151	15	4.5	15	70	21	50	44	0	0	55	0.99
880020--880104	13	5.8	14	75	17	75	50	0	1	48	1.08
880030--880111	22	3.8	20	76	14	92	51	0	0	48	1.00
880020--880109	43	2.1	43	84	12	114	51	0	1	47	1.08
882315--882348	17	1.9	18	94	5	61	41	0	0	58	0.98
882409--882438	15	2.0	15	100	0	60	33	6	20	40	1.78
882686--882810	16	7.6	16	66	25	57	57	2	0	40	1.12
882738--882777	17	2.4	16	91	4	62	55	0	0	45	0.99
882794--882846	20	2.5	21	85	14	65	56	0	0	43	0.99
882729--882849	19	6.2	20	66	25	71	57	0	0	42	1.04
886465--886497	12	2.8	12	90	0	57	33	3	9	54	1.47
886519--886554	17	2.1	18	89	5	56	58	0	0	41	0.98
886519--886554	18	2.1	18	89	5	56	58	0	0	41	0.98
891762--891941	67	2.7	67	76	7	161	26	21	15	37	1.92
905085--905124	19	2.1	19	90	0	62	40	2	10	47	1.50
905636--905678	11	3.6	11	82	17	59	11	4	13	69	1.33
905628--905678	25	2.0	25	100	0	102	11	7	15	64	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905628--905671	14	3.4	14	81	18	67	11	9	18	61	1.55
906097--906142	24	1.9	24	91	8	76	47	2	4	45	1.34
913093--913141	26	2.0	26	88	11	77	40	4	0	55	1.19
917186--917232	15	2.9	16	81	6	51	61	0	0	38	0.96
920658--920775	18	6.1	19	69	26	72	33	2	2	61	1.23
920664--920775	57	2.0	57	96	0	206	32	2	2	62	1.23
920864--920951	16	5.6	16	70	28	57	44	0	1	54	1.07
921227--921263	6	6.2	6	93	0	65	18	35	29	16	1.93
921423--921476	25	2.1	26	83	10	67	48	0	0	51	1.00
922090--922141	21	2.5	22	76	23	67	55	5	3	34	1.42
922332--922387	22	2.6	21	77	8	67	53	0	0	46	1.00
922374--922423	19	2.8	18	85	14	68	54	0	0	46	1.00
922377--922427	18	2.9	17	83	13	59	54	0	0	45	0.99
926121--926181	2	31.0	2	96	3	115	50	0	0	49	1.00
926837--926870	6	5.8	6	89	3	52	52	2	0	44	1.16
926837--926870	18	1.9	17	94	5	59	52	2	0	44	1.16
927808--927864	24	2.3	25	85	14	91	52	0	0	47	1.00
927812--927856	17	2.7	18	83	10	60	55	0	0	44	0.99
927794--927865	24	3.1	23	80	7	56	48	0	0	51	1.00
931424--931549	64	2.0	63	93	1	216	42	15	22	20	1.89
933296--933363	9	7.1	9	79	9	64	60	0	1	38	1.06
933359--933399	6	6.8	6	79	20	50	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933456--933510	29	1.9	28	85	10	76	49	1	0	49	1.11
935152--935275	65	1.9	65	89	0	194	41	9	15	33	1.80
935920--936049	20	6.3	20	68	23	76	41	2	0	55	1.18
935922--936054	7	19.1	7	67	20	66	41	2	0	55	1.17
935922--936062	39	3.4	40	68	17	101	41	2	0	56	1.16
938183--938243	11	5.5	11	78	9	52	36	0	0	63	0.94
938273--938350	36	2.2	35	84	9	95	55	1	1	42	1.16
938294--938351	18	3.2	17	73	11	53	56	1	1	39	1.19
938571--938619	17	3.1	16	80	11	57	67	0	0	32	0.91
938828--938890	25	2.5	26	82	17	80	65	0	0	34	0.93
938838--938877	20	1.9	20	90	10	62	62	0	0	37	0.95
938918--938972	26	2.0	28	86	6	78	52	0	0	47	1.00
939261--939356	9	11.2	8	70	22	54	43	0	0	56	0.99
940110--940141	16	2.0	16	93	0	55	53	0	0	46	1.00
941337--941376	17	2.4	17	91	0	62	50	0	2	47	1.14
947393--947428	2	18.0	2	100	0	72	50	0	0	50	1.00
950813--950884	23	3.1	22	77	13	63	55	0	0	44	0.99
951235--951273	14	2.8	14	81	11	53	33	2	0	64	1.08
956063--956101	17	2.4	17	87	12	55	53	0	2	43	1.14
956449--956641	97	2.0	100	90	3	311	38	9	9	42	1.69
956887--956977	9	9.3	10	66	20	50	42	2	0	54	1.12
957153--957237	29	3.0	30	72	13	97	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957172--957220	16	3.1	16	77	19	57	46	0	0	53	1.00
960770--960869	40	2.6	38	84	10	123	46	1	2	51	1.19
961583--961620	20	1.9	19	89	5	58	39	0	5	55	1.23
962877--962919	9	4.6	9	82	5	50	46	0	0	53	1.00
963442--963477	2	18.0	2	94	0	63	47	0	2	50	1.15
964039--964076	14	2.8	13	85	14	51	50	2	0	47	1.15
964050--964076	7	3.9	7	100	0	54	55	0	0	44	0.99
965262--965306	19	2.4	19	85	10	58	71	4	0	24	1.05
965459--965496	17	2.2	17	90	0	58	34	21	7	36	1.82
966373--966449	14	5.9	14	82	10	83	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19