genome.fa.s92.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold92
Parameters: 2 7 7 80 10 50 1000
Length:  2337674

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  2  of  19  ( 2187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261339--261390	20	2.6	20	76	11	54	51	0	3	44	1.19
261423--261451	3	10.0	3	92	7	51	31	0	0	68	0.89
262053--262085	2	17.0	2	87	6	50	45	0	3	51	1.16
262049--262079	14	2.2	14	100	0	62	41	0	6	51	1.27
272392--272526	6	23.0	6	68	24	67	35	1	0	62	1.10
272392--272529	5	27.8	5	72	19	78	36	1	0	61	1.10
272397--272501	11	9.4	12	73	14	66	38	0	0	60	1.03
272400--272512	53	2.1	54	82	11	144	37	0	0	61	1.02
274740--274798	21	2.9	21	80	12	68	47	1	0	50	1.11
276492--276529	16	2.4	16	86	8	51	28	0	0	71	0.87
277360--277424	29	2.3	27	78	19	69	55	3	0	41	1.15
277751--277775	2	12.5	2	100	0	50	52	0	0	48	1.00
278285--278341	30	1.9	30	86	10	82	42	0	0	57	0.98
278980--279013	6	5.3	6	89	10	50	32	0	0	67	0.91
278980--279019	13	3.1	13	89	7	55	37	0	0	62	0.95
279268--279312	22	2.0	22	83	8	56	57	0	2	40	1.11
281332--281440	28	3.9	27	71	16	62	44	0	0	55	1.06
281907--281976	14	4.9	14	74	10	52	44	1	0	54	1.09
283200--283234	17	2.1	17	88	0	52	31	0	5	62	1.18
284192--284226	2	17.5	2	100	0	70	48	0	0	51	1.00
286718--286763	24	2.0	24	83	12	60	56	2	0	41	1.11
289038--289086	23	2.2	23	85	7	66	44	0	2	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289073--289111	19	2.0	20	90	5	62	33	0	0	66	0.92
290098--290188	46	2.0	47	82	2	112	48	8	6	36	1.60
291306--291371	20	3.5	20	68	21	61	51	0	0	48	1.00
291845--291892	20	2.4	20	75	0	51	50	0	0	50	1.00
294082--294123	22	1.9	22	90	0	66	40	0	0	59	0.97
294984--295047	20	3.1	21	74	17	55	50	0	0	50	1.00
295853--295880	5	5.6	5	100	0	56	17	0	0	82	0.68
296222--296333	20	5.5	21	73	20	78	40	0	0	58	1.04
296222--296311	11	8.6	11	70	19	59	42	0	0	57	0.98
297416--297459	18	2.5	18	85	3	54	52	0	0	47	1.00
298448--298477	15	2.0	15	93	0	51	36	13	3	46	1.60
303723--303771	22	2.2	22	85	0	62	59	0	0	40	0.98
307871--307932	28	2.3	26	77	22	65	48	0	0	51	1.00
307924--308004	38	2.2	38	83	16	100	43	1	0	55	1.07
311807--311914	26	3.8	30	72	15	97	43	0	0	56	0.99
311825--311888	18	3.8	18	72	25	52	45	0	0	54	0.99
311869--311922	26	2.2	24	86	6	72	38	0	0	61	0.96
311843--311936	31	3.0	30	79	18	95	40	0	0	59	0.97
316587--316648	29	2.1	29	84	0	79	46	1	1	50	1.20
316610--316646	13	2.8	14	84	12	51	45	2	0	51	1.15
316996--317031	15	2.5	15	90	4	56	52	0	0	47	1.00
320731--320762	16	2.0	16	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320760--320793	14	2.4	14	85	0	50	41	0	0	58	0.98
324325--324362	18	2.1	18	100	0	76	28	18	5	47	1.70
324440--324478	13	2.9	14	84	7	53	82	0	17	0	0.68
326103--326135	2	16.5	2	100	0	66	48	0	0	51	1.00
334901--334930	2	15.0	2	100	0	60	50	0	0	50	1.00
337268--337382	58	2.0	58	96	0	212	42	6	4	46	1.48
337287--337385	29	3.4	29	67	20	89	45	4	3	47	1.37
337445--337480	9	3.9	9	88	3	54	75	0	2	22	0.94
337756--337794	2	19.5	2	100	0	78	51	0	0	48	1.00
340857--340933	8	9.5	8	69	18	52	54	2	0	42	1.14
343397--343502	9	11.3	9	66	22	58	52	0	2	43	1.22
343369--343511	29	5.0	28	74	12	114	53	1	2	42	1.24
343688--343723	2	18.0	2	94	0	63	50	2	0	47	1.15
343776--343823	23	2.1	23	81	11	55	68	4	10	16	1.33
345290--345319	15	1.9	16	93	6	53	33	0	0	66	0.92
345295--345333	18	2.1	19	85	4	53	30	0	0	69	0.89
345967--346042	10	7.7	10	69	7	57	55	0	1	43	1.08
346003--346057	24	2.2	25	87	3	76	50	0	0	49	1.00
346442--346485	22	2.0	22	86	0	61	63	0	9	27	1.24
346598--346666	29	2.3	29	75	9	68	43	5	2	47	1.42
347814--347858	20	2.4	18	85	10	56	53	0	0	46	1.00
347814--347862	18	2.6	20	81	18	61	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348463--348512	15	3.1	17	76	21	54	48	0	0	52	1.00
348473--348531	20	2.8	20	69	23	50	45	0	0	54	0.99
353353--353394	22	2.0	22	85	4	59	26	2	7	64	1.32
353791--353830	2	20.0	2	100	0	80	50	0	0	50	1.00
355027--355122	41	2.3	44	77	17	105	42	0	0	57	0.98
355980--356025	18	2.6	18	83	12	60	43	0	2	54	1.12
356286--356320	3	11.7	3	93	0	61	2	31	0	65	1.07
358551--358586	2	18.0	2	100	0	72	50	0	0	50	1.00
358834--358867	2	17.0	2	100	0	68	50	0	0	50	1.00
359080--359140	2	31.0	2	83	3	79	47	0	3	49	1.18
359401--359445	19	2.3	20	88	3	65	48	0	0	51	1.00
359898--360184	50	5.8	50	92	0	450	30	20	17	31	1.96
359898--360184	99	2.9	100	91	2	461	30	20	17	31	1.96
364574--364729	50	3.1	49	83	5	188	33	15	15	35	1.89
364574--364751	50	3.6	48	80	8	169	33	16	13	36	1.88
365600--365655	21	2.7	21	77	0	58	62	1	0	35	1.06
365619--365679	29	2.2	27	82	11	70	57	1	1	39	1.18
366266--366310	15	2.9	16	80	6	56	31	0	6	62	1.21
366501--366534	2	16.5	2	87	6	50	44	2	0	52	1.16
366892--366947	5	10.4	5	75	21	51	58	0	0	41	0.98
368461--368520	32	1.9	31	86	3	84	36	0	1	61	1.06
368500--368538	14	2.8	14	84	0	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374161--374199	19	2.0	20	90	10	62	51	2	0	46	1.14
375844--375882	20	2.1	18	85	9	51	56	0	0	43	0.99
376201--376230	15	2.0	15	93	0	51	76	13	0	10	1.01
376482--376532	18	2.8	18	90	0	84	11	39	15	33	1.84
392340--392384	23	1.9	24	86	4	65	66	0	0	33	0.92
392527--392625	52	2.0	48	82	11	119	51	2	0	46	1.12
394438--394477	2	20.0	2	100	0	80	50	0	0	50	1.00
394826--394865	2	20.0	2	100	0	80	50	0	0	50	1.00
396777--396829	28	2.0	28	85	7	74	56	5	0	37	1.23
399508--399559	20	2.7	19	75	21	54	42	1	0	55	1.10
399923--399979	24	2.3	25	79	11	73	47	0	0	52	1.00
402167--402217	17	2.9	18	76	21	54	35	5	1	56	1.35
402922--402961	19	2.1	19	85	4	53	52	2	0	45	1.14
402976--403017	14	3.2	14	83	12	54	59	2	0	38	1.10
405108--405132	6	4.2	6	100	0	50	48	0	0	52	1.00
405761--405787	2	13.5	2	100	0	54	48	0	0	51	1.00
406116--406152	14	2.6	15	83	8	51	27	27	24	21	1.99
407362--407425	32	2.0	32	100	0	128	43	18	6	31	1.75
407737--407769	2	17.0	2	93	6	59	48	0	0	51	1.00
408356--408387	2	16.0	2	100	0	64	0	50	0	50	1.00
411119--411159	2	20.5	2	100	0	82	48	0	0	51	1.00
416263--416324	30	2.1	30	81	6	72	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416565--416623	16	3.9	14	73	26	50	33	3	0	62	1.12
417601--417662	20	3.2	19	82	8	72	64	0	0	35	0.94
417601--417655	11	5.5	10	73	16	51	63	0	0	36	0.95
417926--417978	20	2.8	20	78	16	58	43	0	0	56	0.99
417924--418043	41	2.9	41	77	14	120	40	0	0	58	1.04
417924--418066	41	3.4	41	74	14	112	40	0	1	58	1.07
418008--418059	18	2.9	18	82	0	68	32	0	0	67	0.91
420090--420180	17	5.5	17	67	10	53	41	0	0	58	0.98
420097--420181	12	6.5	13	74	15	59	41	0	0	58	0.98
423092--423151	26	2.3	26	75	18	61	45	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19