genome.fa.s1465.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001465.1 Hibiscus syriacus cultivar Beakdansim tig00002840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11160956

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   

This is table  55  of  55  ( 6520 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11067416--11067462	20	2.4	19	79	10	58	19	17	8	55	1.67
11067584--11067629	20	2.3	20	89	10	76	17	17	10	54	1.70
11067697--11068136	228	1.9	224	92	4	733	39	7	8	44	1.62
11070639--11070714	32	2.4	32	86	0	116	26	18	5	50	1.68
11075079--11075118	19	2.1	19	90	0	62	45	12	0	42	1.42
11079682--11079712	15	2.1	15	100	0	62	0	29	12	58	1.35
11081315--11081363	20	2.6	18	81	15	62	55	6	0	38	1.25
11090683--11090767	15	5.3	15	71	15	62	44	0	0	55	0.99
11090717--11090796	41	2.0	41	85	5	108	47	0	0	52	1.00
11090730--11090799	21	3.3	21	67	13	54	48	0	0	51	1.00
11092961--11092997	17	2.2	17	95	0	65	16	24	40	18	1.90
11092993--11093062	29	2.5	29	82	13	92	27	28	27	17	1.97
11092993--11093061	9	7.3	9	83	4	75	27	28	27	15	1.96
11100236--11100294	17	3.2	17	78	21	73	13	23	44	18	1.86
11100246--11100288	12	3.8	12	87	12	72	11	23	46	18	1.82
11100241--11100293	22	2.4	22	93	0	97	9	22	49	18	1.76
11100290--11100369	9	8.3	9	80	10	70	28	26	28	16	1.97
11100296--11100370	29	2.5	31	89	8	120	29	26	26	17	1.97
11101526--11101556	16	1.9	16	100	0	62	51	19	9	19	1.74
11104890--11104932	3	14.3	3	90	0	68	72	0	0	27	0.85
11105081--11105127	14	3.3	15	80	17	55	72	2	0	25	0.96
11106991--11107103	34	3.2	34	83	11	145	45	33	7	14	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11117122--11117155	13	2.6	13	95	0	59	47	26	8	17	1.77
11118341--11118386	2	23.0	2	100	0	92	50	0	0	50	1.00
11119730--11119759	13	2.2	14	94	5	53	13	36	13	36	1.84
11127889--11127937	3	16.0	3	91	4	80	2	34	0	63	1.06
11129110--11129173	18	3.6	18	71	23	62	4	12	29	53	1.59
11129274--11129327	26	2.1	26	82	6	65	50	24	11	14	1.75
11144972--11145023	25	2.1	24	82	10	61	55	0	0	44	0.99
11146120--11146425	158	1.9	158	91	1	506	32	17	16	33	1.93
11146863--11146898	17	2.2	17	90	5	56	16	19	0	63	1.30
11146870--11146902	17	2.0	17	94	5	59	18	15	0	66	1.25
11148355--11148641	77	3.8	77	95	0	506	21	31	25	20	1.98
11153045--11153088	22	2.0	21	86	4	61	34	0	0	65	0.93
11153050--11153091	18	2.3	19	84	12	61	33	0	0	66	0.92
11153051--11153095	22	2.0	22	91	8	74	31	0	0	68	0.89
11154388--11154472	30	3.1	29	62	28	69	47	3	14	35	1.61
11154381--11154504	51	2.3	53	90	5	198	45	3	12	37	1.59
11154380--11154472	24	3.7	26	77	11	113	47	3	13	35	1.60
11159061--11159099	19	2.0	19	85	5	51	12	10	23	53	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55

The End!